X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2FfeaturesFormat.html;h=a2536e2298ddb44ce69425b4d2c1f6fce98797d3;hb=bf2b9bfde805dbd7ea0dc38e70532204b68071ed;hp=02261753cce122e069cafae463055bae0191b7f7;hpb=fca7d6a803e4edc9aeee0ee39ca980d11ca13346;p=jalview.git diff --git a/help/help/html/features/featuresFormat.html b/help/help/html/features/featuresFormat.html index 0226175..a2536e2 100755 --- a/help/help/html/features/featuresFormat.html +++ b/help/help/html/features/featuresFormat.html @@ -42,7 +42,7 @@
- -features <Features filename> + --features <Features filename>
Feature attributes can be included as name=value
pairs in GFF3 column 9, including (since Jalview 2.11.1.0) 'nested' sub-attributes, for example:
+ alleles=G,A,C;AF=6;CSQ=SIFT=deleterious,tolerated,PolyPhen=possibly_damaging(0.907)
+
where SIFT
and PolyPhen
are sub-attributes of CSQ
. This data is preserved if features are exported in GFF format (but not, currently,
+ in Jalview format).
+
Jalview's sequence feature format