X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2Ffeaturesettings.html;h=ad6627b6264531d271394e3beb736fc355eab15f;hb=5d2c0511475e6c1a0d5b45765e5e5a8072a45531;hp=555e2ba0de5cca076a80e0cf11e88d7d8e610feb;hpb=dd193c9ceff22f721c53814fd9c37f269a9edfde;p=jalview.git

diff --git a/help/help/html/features/featuresettings.html b/help/help/html/features/featuresettings.html
index 555e2ba..ad6627b 100755
--- a/help/help/html/features/featuresettings.html
+++ b/help/help/html/features/featuresettings.html
@@ -123,11 +123,18 @@
   </p>
   <p>
     <strong><a name="sortbyfeature">Ordering alignment by
-        features</a></strong></p><p>The 'Seq Sort by Score' and 'Seq Sort by
-    Density' buttons will sort the alignment based on the average score
-    or total number of currently active features and groups on each
-    sequence. To order the alignment using a specific feature type, use
-    the <em>sort by ..</em> entries in the pop-up menu for that type.<br>
+        features</a></strong>
+  </p>
+  <p>
+    The 'Seq Sort by Score' and 'Seq Sort by Density' buttons will sort
+    the alignment based on the average score or total number of
+    currently active features and groups on each sequence. A dialog box
+    is shown if there are no features to use for sorting sequences. To
+    order the alignment using a specific feature type, use the
+    <em>sort by ..</em> entries in the pop-up menu for that type.<br> <br>When
+    a selected region exists, only features lying within the columns
+    containing the selected region will be considered, but all sequences
+    (including those not selected) will be reordered.
     <em>Feature sorting and graduated feature colouring were
       introduced in Jalview 2.5</em>
   </p>