X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2Ffeaturesettings.html;h=ad6627b6264531d271394e3beb736fc355eab15f;hb=5d2c0511475e6c1a0d5b45765e5e5a8072a45531;hp=d94e2a6f8496273c6ce3b5f87d0213fc186d8b23;hpb=9089a12a1af6e2d840c194d903f1cef078cea283;p=jalview.git diff --git a/help/help/html/features/featuresettings.html b/help/help/html/features/featuresettings.html index d94e2a6..ad6627b 100755 --- a/help/help/html/features/featuresettings.html +++ b/help/help/html/features/featuresettings.html @@ -29,7 +29,7 @@
Select View→Feature Settings... in an alignment window to open the feature settings dialog box, which allows - precise control the visibility and appearance of sequence features for + precise control of the visibility and appearance of sequence features for an alignment view.
The top section of the dialog box lists all the sequence feature groups, along with a tickbox for each that controls whether its features are displayed. When many groups are present, their names may - be truncated, but the full name be shown in a tooltip when the mouse + be truncated, but the full name is shown in a tooltip when the mouse hovers over their checkbox.
Feature colour schemes and filters
@@ -123,11 +123,18 @@
Ordering alignment by - features
The 'Seq Sort by Score' and 'Seq Sort by
- Density' buttons will sort the alignment based on the average score
- or total number of currently active features and groups on each
- sequence. To order the alignment using a specific feature type, use
- the sort by .. entries in the pop-up menu for that type.
+ features
+
+ The 'Seq Sort by Score' and 'Seq Sort by Density' buttons will sort
+ the alignment based on the average score or total number of
+ currently active features and groups on each sequence. A dialog box
+ is shown if there are no features to use for sorting sequences. To
+ order the alignment using a specific feature type, use the
+ sort by .. entries in the pop-up menu for that type.
When
+ a selected region exists, only features lying within the columns
+ containing the selected region will be considered, but all sequences
+ (including those not selected) will be reordered.
Feature sorting and graduated feature colouring were
introduced in Jalview 2.5