X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2Fgroovy.html;h=cb0b10c667595dd0bcf46df282289943ec02c4fb;hb=56ce5cb6fd0b54f831cf35859886cd69a7f522a3;hp=ead44369ef3f87aa2d19368b9056f2611a5880ac;hpb=44d68d55d9c85bf7b28853feeebc4b901c4a8392;p=jalview.git diff --git a/help/help/html/features/groovy.html b/help/help/html/features/groovy.html index ead4436..cb0b10c 100644 --- a/help/help/html/features/groovy.html +++ b/help/help/html/features/groovy.html @@ -39,7 +39,7 @@ installation of Groovy. Just select Tools→Groovy Console... from the Jalview Desktop's drop-down menu. After a short pause, you should then see the Groovy + href="https://groovy-lang.org/groovyconsole.html">Groovy Console appear. This allows you to interactively execute Groovy scripts whilst Jalview is running. We've also provided a Calculations→Execute Groovy Script button so you can execute the currently loaded @@ -47,7 +47,7 @@
Executing groovy scripts on Jalview startup
- The -groovy <script> option on the
+ The --groovy <script> option on the
Jalview command line will execute the contents of <script>.
<script> may be a file, a URL, or alternatively if it is
"STDIN" then the standard input will be used.
Note:
@@ -76,7 +76,7 @@
window which is currently being looked at by the user
Using Groovy to add new Alignment Calculations
We've
@@ -115,8 +115,8 @@ print currentAlFrame.getTitle();
Creating custom colourschemes
You can create your own alignment colourschemes with a groovy script. We've provided two examples: