X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2Fpaematrices.html;h=8d180ee9780443022c9929477ccc7638ff9565b6;hb=8e181c9e8080fd02cc2eedc375c8bdb2a4c176c3;hp=6672bb30004d5c4d902406192aa8bc1f274443fc;hpb=fd92437e842613aa20618b6dbbec966e9e54b464;p=jalview.git

diff --git a/help/help/html/features/paematrices.html b/help/help/html/features/paematrices.html
index 6672bb3..8d180ee 100644
--- a/help/help/html/features/paematrices.html
+++ b/help/help/html/features/paematrices.html
@@ -43,8 +43,10 @@
 			href="https://alphafold.ebi.ac.uk/entry/O04090">O04090 3D model</a>
 		at EBI-AlphaFoldDB).
 	</p>
-	<div align="center">
-	<img src="../structures/epas1_annotdetail.png" width="400"/></div>
+	<div style="display:flex; flex-wrap:wrap;"align="center" width="100%">
+	<figure><img src="../structures/epas1_annotdetail.png" height="300"/><figcaption>Alignment of EPAS1 homologs from Human, Rat and Cow, with predicted alignment error shown in Jalview</figcaption></figure>
+	<figure><img src="../structures/epas1_pae_ebiaf.png" height="300"/><figcaption>Predicted Alignment Error Matrix<br/>from <a href="https://alphafold.ebi.ac.uk/entry/Q99814">https://alphafold.ebi.ac.uk/entry/Q99814</a></figcaption></figure>
+	</div>
 	<p>
 		<strong>Importing PAE Matrices</strong>
 	</p>
@@ -54,10 +56,11 @@
 			href="../features/structurechooser.html">Jalview's structure
 			chooser</a> GUI. If you have produced your own models and accompanying
 		PAE matrices using a pipeline such as ColabFold, then you can load
-		them both together via the <a
-			href="../features/structurechooser.html#loadpdbfile">Load PDB
-			File</a> dropdown menu in the 3D structure chooser. in a <a
-			href="../io/paematrixformat.html">supported PAE format</a>.
+		them both together via the
+		<a href="../features/structurechooser.html#loadpdbfile">Load PDB
+			File</a> dropdown menu in the 3D structure chooser, providing it is
+		in a
+		<a href="../io/paematrixformat.html">supported PAE format</a>.
 	</p>
 	<p>
 		The <a href="../features/clarguments-basic.html">Command Line