X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2Fsearch.html;fp=help%2Fhelp%2Fhtml%2Ffeatures%2Fsearch.html;h=d559db82a02efcafc28feee3f1647abc76b5de43;hb=635845424278989756196c2c925777618055774d;hp=837d7b3d8aaa9b5ef48ce53b1cd1d34e776f4e4c;hpb=035b954692d6000af7853846301412e8d4acbcd6;p=jalview.git diff --git a/help/help/html/features/search.html b/help/help/html/features/search.html index 837d7b3..d559db8 100755 --- a/help/help/html/features/search.html +++ b/help/help/html/features/search.html @@ -38,8 +38,8 @@ td { selecting "Find..." from the "Search" menu.

"Find next" will find the next occurrence of the - specified and adjust the alignment window view to show it, and - "Find all" highlights all matches for a pattern. The + query and adjust the alignment window view to show it, and + "Find all" highlights all matches for a query. The "New Feature" is a quick way to highlight and group residues matching the specified search pattern throughout the alignment. @@ -49,9 +49,9 @@ td {

  • Gaps are ignored when matching the query to the sequences in the alignment.
  • Hidden columns can optionally be ignored (since Jalview 2.11)
  • -
  • The search is applied to both sequences and their IDs, and - optionally also to the description string (since Jalview - 2.10) +
  • The search is applied to both sequences and their IDs. It can + optionally also be applied to the description string (since Jalview + 2.10), and sequence feature descriptions (since Jalview 2.11.2.5).
  • If a region is selected, then search will only be performed on that region.
    @@ -84,6 +84,12 @@ td { highlighted region.

    + Copying highlighted regions to a new alignment +

    +

    + You can copy the currently highlighted matching regions of sequences to the clipboard with alt-Command-C. +

    +

    A quick Regular Expression Guide