X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2Fstructurechooser.html;h=f91b1dd58cc2038337f5df6b96964f89d50d1780;hb=893f21fe8df6a9d47ced8140e3ba75f03407be00;hp=2c77049d23515dd5cf07a0134281aaa58dfef65e;hpb=c902ed8d8708cf273963f4d08e2fd46d06280e0c;p=jalview.git
diff --git a/help/help/html/features/structurechooser.html b/help/help/html/features/structurechooser.html
index 2c77049..f91b1dd 100644
--- a/help/help/html/features/structurechooser.html
+++ b/help/help/html/features/structurechooser.html
@@ -176,21 +176,47 @@
style="width: 464px; height: 173px;">
Manual
selection/association of PDB files with Sequences
To manually associate PDB files with a sequence, select 'From - File', or 'Enter PDB Id' from the drop-down menu: -
- The Structure Chooser interface was introduced in Jalview - 2.9. -
++ Manual Association of PDBe accessions with sequences +
+If for some reason the PDBe and 3D beacons search fail to + automatically the PDB structure or model you wish to import, you can + select 'Enter PDB Id' from the drop-down menu to manually specify PDB + identifiers for one or more selected sequences. The PDB Rest API, + provided by EMBL-EBI, is used to validate accessions exist, and fetch + structure data.
++ Import structure models + and metadata from file +
+
+ Selecting the From File option from the drop down
+ menu allows 3D structure data to be imported from your own computer.
+ PDB or mmCIF files associated in this way are also saved in Jalview Projects.
+ The 'From File' dialog provides a drop down menu which allows you to
+ specify how the Temperature Factor metadata for each residue in the 3D
+ structure data file is interpreted:
+
+
+ An additional Predicted Alignment Error file can also be + provided when importing 3D structure data. Jalview supports import of + PAE Matrices provided as AlphaFold + format JSON files - which are also produced by ColabFold. See Working with PAE Matrices for details on + what Jalview allows you to do with associated PAE matrix data. +
++ The Structure Chooser interface was introduced in Jalview + 2.9. +