X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Fmemory.html;h=7d6fb858f395a814edb0b11157587ef697affd8e;hb=406c75985c3585f3c6bf8d6f4778d9fb28c7bf2c;hp=81190a90dd764b318f3ab2736e7497f05b50d7b0;hpb=a58be5fb3401c0b0f74d6089d2eaaf7691e6418f;p=jalview.git diff --git a/help/help/html/memory.html b/help/help/html/memory.html index 81190a9..7d6fb85 100755 --- a/help/help/html/memory.html +++ b/help/help/html/memory.html @@ -80,7 +80,7 @@ arguments, but you must put the jvl file first, e.g.
/PATH_TO_JALVIEW/Jalview /path/to/file/mymemorysetting.jvl /path/to/alignments/myalignment.faAlternatively, you can use the standard Jalview command line arguments with or without the jvl file (first), e.g.
- /PATH_TO_JALVIEW/Jalview /path/to/file/mymemorysetting.jvl -open http://www.jalview.org/examples/jpred_msa.fasta -annotations http://www.jalview.org/examples/jpred_msa.seq.concise -colour ClustalYou can use command line arguments to control memory + /PATH_TO_JALVIEW/Jalview /path/to/file/mymemorysetting.jvl -open https://www.jalview.org/examples/jpred_msa.fasta -annotations https://www.jalview.org/examples/jpred_msa.seq.concise -colour Clustal You can use command line arguments to control memory settings in Windows and macOS too:
\PATH_TO_JALVIEW\Jalview.exe %HOMEPATH%\mymemorysetting.jvl -open %HOMEPATH%\myalignment.faIn macOS you can use the macOS open command like this:
@@ -90,7 +90,17 @@
jalview.jvmmemmax = 32G- Adjusting this default (via a JVL file, above) will allow larger amounts of memory to be allocated to Jalview in connjunction with the jalview.jvmmempc setting. + Adjusting this default (via a JVL file, above) will allow larger amounts (or can limit the amount) of memory to be allocated to Jalview in conjunction with the jalview.jvmmempc setting. +
java -jar jalview-all-2.11.1.0-j1.8.jar -jvmmempc=50 -jvmmemmax=20g+ (this example will launch Jalview with a maximum heap size of the smaller of 20GB or 50% of physical memory detected). +