X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Fmenus%2FalignmentMenu.html;fp=help%2Fhtml%2Fmenus%2FalignmentMenu.html;h=3a057a8567b9f4801af371898373e9147a790ad5;hb=ca8504cf9d10874dce9f07cf7a9d933853fe0dd0;hp=f3ab75dfbbc55786166c79c35ee50254ede337c9;hpb=775e7bc104584e88dddcea73fbf02c66f5200c16;p=jalview.git

diff --git a/help/html/menus/alignmentMenu.html b/help/help/html/menus/alignmentMenu.html
similarity index 99%
rename from help/html/menus/alignmentMenu.html
rename to help/help/html/menus/alignmentMenu.html
index f3ab75d..3a057a8 100755
--- a/help/html/menus/alignmentMenu.html
+++ b/help/help/html/menus/alignmentMenu.html
@@ -483,7 +483,13 @@
       </strong> <em>See <a href="../colourSchemes/index.html">colours</a>
           for a description of all colour schemes.
       </em><br></li>
-      <li><strong>By Conservation<br>
+        <li><strong>Sequence ID<br></strong><em>Shades
+            sequences using their Sequence ID colour. Useful when
+            performing <a
+            href="../calculations/treeviewer.html#partitioning">tree
+              based subfamily analysis</a>.
+        </em></li>
+        <li><strong>By Conservation<br>
       </strong><em>See <a href="../colourSchemes/conservation.html">Colouring
             by Conservation</a>.
       </em><br></li>