X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Fmenus%2FalignmentMenu.html;h=fef5bb973e0bdd395c6f450c3626420becdd39eb;hb=4b7d3640209c4434d569c746672cf9eed4250ace;hp=3a057a8567b9f4801af371898373e9147a790ad5;hpb=44d68d55d9c85bf7b28853feeebc4b901c4a8392;p=jalview.git
diff --git a/help/help/html/menus/alignmentMenu.html b/help/help/html/menus/alignmentMenu.html
index 3a057a8..fef5bb9 100755
--- a/help/help/html/menus/alignmentMenu.html
+++ b/help/help/html/menus/alignmentMenu.html
@@ -169,6 +169,16 @@
paste the clipboard contents to a text editor, you will see
the format of the copied residues FASTA.
+
Copy Highlighted region (Control Shift
+ C)
Copies each stretch of highlighted
+ residues as a new sequence on the system clipboard - you can
+ also do this by pressing <CTRL> <SHIFT> and C
+ (<APPLE> <SHIFT> and C on MacOSX).
Use
+ this when you want to extract sequence regions highlighted
+ as a result of a Find operation, or due to mouseovers or
+ selections made in other views such as an assocated 3D
+ structure viewer.
+
Paste
- To New Alignment (Control Shift V)
@@ -477,8 +487,9 @@
and the intensity threshold for transition between them.
- Colour Scheme options: None, ClustalX,
Blosum62 Score, Percentage Identity, Zappo, Taylor,
+ gecos-flower, gecos-blossom, gecos-sunset, gecos-ocean,
Hydrophobicity, Helix Propensity, Strand Propensity, Turn
- Propensity, Buried Index, Nucleotide, Purine/Pyrimidine, User
+ Propensity, Buried Index, Nucleotide, Nucleotide Ambiguity, Purine/Pyrimidine, User
Defined
See colours
for a description of all colour schemes.
@@ -547,7 +558,7 @@
- Calculate Tree or PCA ...
Opens the
calculations dialog for
for calculating trees or
- principle component analysis
+ principal component analysis
plots on the alignment or the currently selected
region.