X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Fmenus%2Falwcalculate.html;fp=help%2Fhtml%2Fmenus%2Falwcalculate.html;h=d08f7136773375e2394860805041580d732a7087;hb=ca8504cf9d10874dce9f07cf7a9d933853fe0dd0;hp=c7a1c87c9c005b8a5c8b5f14265ac4f8be54d305;hpb=775e7bc104584e88dddcea73fbf02c66f5200c16;p=jalview.git
diff --git a/help/html/menus/alwcalculate.html b/help/help/html/menus/alwcalculate.html
similarity index 92%
rename from help/html/menus/alwcalculate.html
rename to help/help/html/menus/alwcalculate.html
index c7a1c87..d08f713 100755
--- a/help/html/menus/alwcalculate.html
+++ b/help/help/html/menus/alwcalculate.html
@@ -73,15 +73,17 @@
parsed into sequence associated annotation which can then be
used to sort the alignment via the Sort by→Score menu.
-
Translate as cDNA (not applet)
This
+ Translate as cDNA
This
option is visible for nucleotide alignments. Selecting this
option shows the DNA's calculated protein product in a new split frame window. Note
that the translation is not frame- or intron-aware; it simply
- translates all codons in each sequence, using the standard genetic code (any incomplete
- final codon is discarded). You can perform this action on the
- whole alignment, or selected rows, columns, or regions.
+ translates all codons in each sequence. You can use the standard genetic code, or choose an
+ alternative code table (any incomplete final codon is discarded).
+ You can perform this action on the whole alignment, or selected
+ rows, columns, or regions. Alternative code tables were added in
+ Jalview 2.11.
Reverse, Reverse Complement (not applet)
These options are visible for nucleotide alignments.