X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=06ff9794391668f640b1eb5a409772ed6f9904f4;hb=77745a47387bb12c3e4dea8bbec8ff38499571f2;hp=a2e3d6164cc300647913ea18b8657e901dbeb745;hpb=940d18951d460f9f3f0be6472327e68d09e480fe;p=jalview.git

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index a2e3d61..06ff979 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -58,37 +58,46 @@ li:before {
     <tr>
       <td width="60" align="center" nowrap><strong><a
           id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.0">.0</a><br />
-          <em>27/03/2020</em></strong></td>
+          <em>2/04/2020</em></strong></td>
       <td align="left" valign="top">
         <ul>
           <li>
-          <!-- JAL-3187 -->Option to show 'virtual' codon features on protein (or vice versa)
+            <!-- JAL-3187,JAL-3305,JAL-3304,JAL-3302 -->Map 'virtual'
+            codon features shown on protein (or vice versa) for display
+            in alignments, on structure views and for export.
           </li>
           <li>
-          <!-- JAL-3304 -->Option to export virtual features if shown
+            <!-- JAL-3121 -->Feature attributes from VCF files can be
+            exported and re-imported as GFF3 files
           </li>
           <li>
-          <!-- JAL-3302 -->Option to transfer virtual features to Chimera
+            <!-- JAL-3376 -->Capture VCF &quot;fixed column&quot; values
+            POS, ID, QUAL, FILTER as Feature Attributes
           </li>
           <li>
-          <!-- JAL-3121 -->Feature attributes from VCF files can be exported and re-imported as GFF3 files
+            <!-- JAL-3375 -->More robust VCF numeric data field
+            validation while parsing
           </li>
           <li>
-            <!-- JAL-3376 -->Capture VCF &quot;fixed column&quot; values POS,
-            ID, QUAL, FILTER as Feature Attributes
+            <!-- JAL-3533 -->Feature Settings dialog keeps same screen
+            position if reopened
           </li>
           <li>
-            <!-- JAL-3375 -->More robust VCF numeric data field validation while parsing
+            <!-- JAL-3535 -->Feature Settings dialog title includes name
+            of associated view
           </li>
           <li>
-            <!-- JAL-3533 -->Feature Settings dialog keeps same screen position if reopened 
-           </li>
+            <!-- JAL-3538 -->Font anti-aliasing in alignment views
+            enabled by default
+          </li>
           <li>
-            <!-- JAL-3538 -->Font anti-aliasing in alignment views enabled by default
-           </li>
+            <!-- JAL-3468 -->Very long feature descriptions truncated in
+            tooltips and menus
+          </li>
           <li>
-            <!-- JAL-3468 -->Very long feature descriptions truncated in tooltips and menus
-           </li>
+            <!-- JAL-3549 -->Warn if Sort by Score or Density attempted
+            with no feature types visible
+          </li>
         </ul><em>Jalview Installer</em>
 	    <ul>
           <li>
@@ -120,14 +129,29 @@ li:before {
             report
           </li>
         </ul>
+        <em>Groovy Scripts</em>
+            <ul>
+          <li>
+            <!--  JAL-3547 -->exportconsensus.groovy prints a FASTA file
+            to stdout containing the consensus sequence for each
+            alignment in a Jalview session
+          </li>
+        </ul>
       </td>
       <td align="left" valign="top">
         <ul>
           <li>
-            <!-- JAL-3412 -->ID margins for CDS and Protein views not equal when split frame is first opened
+            <!-- JAL-3549 -->Undo 'Null' operation shown after sort by
+            buttons in Feature Settings dialog are clicked when no
+            features are visible
           </li>
           <li>
-            <!-- JAL-3296 -->Sequence position numbers in status bar not correct after editing a sequence's start position
+            <!-- JAL-3412 -->ID margins for CDS and Protein views not
+            equal when split frame is first opened
+          </li>
+          <li>
+            <!-- JAL-3296 -->Sequence position numbers in status bar not
+            correct after editing a sequence's start position
           </li>
           <li>
             <!-- JAL-3377 -->Alignment is misaligned in wrapped mode
@@ -155,10 +179,12 @@ li:before {
             IllegalArgumentException in some circumstances
           </li>
           <li>
-            <!-- JAL-3534 -->Multiple feature settings dialogs can be opened for a view
+            <!-- JAL-3534 -->Multiple feature settings dialogs can be
+            opened for a view
           </li>
           <li>
-            <!-- JAL-2764 -->Feature Settings dialog is orphaned if alignment window is closed
+            <!-- JAL-2764 -->Feature Settings dialog is orphaned if
+            alignment window is closed
           </li>
           <li>
             <!-- JAL-3406 -->Credits missing some authors in Jalview
@@ -167,22 +193,26 @@ li:before {
         </ul> <em>Java 11 Compatibility issues</em>
         <ul>
           <li>
-            <!-- JAL-2987 -->OSX - Can't view some search results in PDB/Uniprot search panel
+            <!-- JAL-2987 -->OSX - Can't view some search results in
+            PDB/Uniprot search panel
           </li>
-	</ul> <em>Installer</em>
+        </ul> <em>Installer</em>
         <ul>
-          <li><!-- JAL-3447 -->Jalview should not create file associations for 3D structure files (.pdb, .mmcif. .cif)
+          <li>
+            <!-- JAL-3447 -->Jalview should not create file associations
+            for 3D structure files (.pdb, .mmcif. .cif)
           </li>
         </ul> <em>Repository and Source Release</em>
         <ul>
           <li>
-            <!-- JAL-3474 -->removed obsolete .cvsignore files from repository
+            <!-- JAL-3474 -->removed obsolete .cvsignore files from
+            repository
           </li>
           <li>
-            <!-- JAL-3541 -->Clover report generation running out of memory
+            <!-- JAL-3541 -->Clover report generation running out of
+            memory
           </li>
-        </ul>
-        <em>New Known Issues</em>
+        </ul> <em>New Known Issues</em>
         <ul>
           <li>
             <!-- JAL-3523 -->OSX - Current working directory not
@@ -195,7 +225,12 @@ li:before {
             enabled
           </li>
           <li>
-            <!-- JAL-3542 -->Jalview Installation type always reports 'Source' in console output
+            <!-- JAL-3542 -->Jalview Installation type always reports
+            'Source' in console output
+          </li>
+          <li>
+            <!-- JAL-3562 -->Test Suite: Certain Functional tests fail on jalview's
+            bamboo server but run fine locally.
           </li>
         </ul>
       </td>