X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=0a2065078ea442303ffd285e300519094389fbaa;hb=dd193c9ceff22f721c53814fd9c37f269a9edfde;hp=88b0fd76d39efb81877489f093c09fe55936ea04;hpb=843189dd99cb3c000a93870a268d665ad4c7cedb;p=jalview.git diff --git a/help/help/html/releases.html b/help/help/html/releases.html index 88b0fd7..0a20650 100755 --- a/help/help/html/releases.html +++ b/help/help/html/releases.html @@ -57,13 +57,38 @@ li:before { - 2.11
- 20/06/2019 + 2.11.0
+ 04/07/2019 Documentation + Development and Release Processes + + + - - + stop_gained variants not shown correctly on + peptide sequence (computed variant shown as p.Res.null) + +
  • + 'Graduated colour' option not offered for + manually created features (where feature score is Float.NaN) +
    • +
  • + Blank extra columns drawn or printed + when columns are hidden +
    • +
  • + Regular expression error for '(' in Select + Columns by Annotation description +
    • +
  • + Scroll doesn't stop on mouse up after dragging + out of Scale or Annotation Panel +
    • +
  • + Column selection incorrect after scrolling out of + scale panel +
    • +
  • + Left/right drag in annotation can scroll + alignment down +
    • +
  • + Error if mouse moved before clicking Reveal in + scale panel +
    • +
  • + Column display is out by one after Page Down, + Page Up in wrapped mode +
    • +
  • + Finder doesn't skip hidden regions +
    • +
  • + Finder searches in minimised alignments +
    • +
  • + 'Apply Colour to All Groups' not always selected + on opening an alignment +
    • +
  • + 'Colour by Annotation' not marked selected in + Colour menu +
    • +
  • + Per-group Clustal colour scheme changes when + different groups in the alignment are selected +
    • +
  • + Internationalised colour scheme names not shown + correctly in menu +
    • +
  • + Colour by Annotation can go black at min/max + threshold limit +
    • +
  • + Value input for graduated feature colour + threshold gets 'unrounded' +
    • +
  • + PCA image export doesn't respect background + colour +
    • +
  • + PCA points don't dim when rotated about y axis +
    • +
  • + PCA Print dialog continues after Cancel +
    • +
  • + Cancel in Tree Font dialog resets alignment, not + Tree font +
    • +
  • + Associate Tree with All Views not restored from + project file +
    • +
  • + Scrolling of split frame is sluggish if Overview + shown in complementary view +
    • +
  • + Codon consensus incorrectly scaled when shown + without normalisation +
    • +
  • + Sequence Details report should open positioned at top + of report +
    • +
  • + Help page can be opened twice +
    • +
  • + Fuzzy text in web service status menu on OSX Mojave +
    • + Editing + Datamodel - Editing + Sequence.findIndex returns wrong value when + sequence's End is greater than its length + + Bugs fixed for Java 11 Support (not yet on + general release) - New Known Defects + Menus work properly in split-screen + + New Known Defects - - + Closing tree windows with CMD/CTRL-W for + alignments with multiple views can close views unexpectedly + + + Java 11 Specific defects + + +
    @@ -366,7 +549,7 @@ li:before { Hidden sequence markers and representative sequence bolding included when exporting alignment as EPS, SVG, PNG or HTML. Display is configured via the - Format menu, or for command-line use via a jalview + Format menu, or for command-line use via a Jalview properties file.
  • @@ -440,7 +623,7 @@ li:before {
  • .jvp should be used as default extension - (not .jar) when saving a jalview project file. + (not .jar) when saving a Jalview project file.
  • Mac Users: closing a window correctly @@ -521,6 +704,10 @@ li:before { open URL in the browser can be dropped onto Jalview.
    • + New Known Defects +
    @@ -554,6 +741,11 @@ li:before { Improved performance when rendering lots of features (particularly when transparency is disabled) +
  • + Experimental features in 2.10.2 for + exchange of Jalview features and Chimera attributes made + generally available +
    • @@ -675,7 +867,11 @@ li:before { Sequences' enabled) or Ensembl isoforms (Workaround in 2.10.4 is to fail back to N&W mapping) - +
  • + Export Annotations from File Menu with CSV + option gives blank output +
    • + @@ -1427,6 +1623,15 @@ li:before { User defined gap colour not shown in overview when features overlaid on alignment +
  • + Feature settings for different views not + recovered correctly from Jalview project file +
    • +
  • + Feature colours in overview when first opened + (automatically via preferences) are different to the main + alignment panel +
    • Data import/export