X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=1ddc6e5ab56e912d7eaaf9a0e5353b43fa75f25e;hb=74f21ca6ca8fa17d53708e457d191e15904f8310;hp=31b957c1368cfbab13797f2d1b0dd3d8f9286976;hpb=71332f2343d253b168b1438d5320d9bdcdffd427;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 31b957c..1ddc6e5 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,8 +57,31 @@ li:before {
+
2.11.0
- 02/07/2019
+ 04/07/2019
|
@@ -75,7 +98,7 @@ li:before {
-
File type associations for
- formats supported by jalview (including .jvp project files)
+ formats supported by Jalview (including .jvp project files)
-
Jalview launch files (.jvl) to pass command line
@@ -100,7 +123,6 @@ li:before {
IntervalStoreJ (NCList
implementation that allows updates) used for Sequence Feature collections
-
-
-
Sequence
features can be filtered and shaded according to any
associated attributes (e.g. variant attributes from VCF
@@ -176,7 +198,7 @@ li:before {
-
Alignment Overview now WYSIWIS (What you see is
- what is shown)
Only visible region of alignment is shown by
+ what is shown) Only visible regions of alignment are shown by
default (can be changed in user preferences)
-
@@ -204,7 +226,7 @@ li:before {
annotation
-
- Help button on Uniprot and PDB search panels
+ Help button on Uniprot and PDB search panels
-
Cursor changes over draggable box in Overview
@@ -232,59 +254,55 @@ li:before {
Deprecations
- -
- DAS sequence retrieval and annotation
+
- DAS sequence retrieval and annotation
capabilities removed from the Jalview Desktop
- -
- Castor library for XML marshalling and
+
- Castor library for XML marshalling and
unmarshalling has been replaced by JAXB for Jalview projects
and XML based data retrieval clients
- Disable VAMSAS menu in preparation for removal
- Jalview Desktop no longer distributed via Java Web Start
Documentation
- -
- Added remarks about transparent rendering effects
+
- Added remarks about transparent rendering effects
not supported in EPS figure export
- Typos in documentation for Preferences dialog
Development and Release Processes
-
- Build system migrated from Ant to Gradle
+ Build system migrated from Ant to Gradle
- - Enhanced checks for missing and duplicated keys in Message bundles
+ -
+ Enhanced checks for missing and duplicated keys in Message bundles
-
- Eclipse project configuration managed with
+ Eclipse project configuration managed with
gradle-eclipse
-
- Atlassian
+ Atlassian
Bamboo continuous integration for unattended Test Suite
execution
-
- Memory test suite to detect leaks in common
+ Memory test suite to detect leaks in common
operations
-
- More unit test coverage, and minor
- issues resolved.
+ More unit test coverage, and minor
+ issues resolved
-
- Developer documentation migrated to
+ Developer documentation migrated to
markdown (with HTML rendering)
-
- HelpLinksChecker runs on Windows
+ HelpLinksChecker runs on Windows
-
- New URLs for publishing development
+ New URLs for publishing development
versions of Jalview
- -
-
-
|
@@ -327,8 +345,8 @@ li:before {
Settings and Jalview Preferences panels
- Jalview hangs when closing windows or the
- overview updates with large alignments
+ Jalview hangs when closing windows, or redrawing the
+ overview with large alignments
Tree and PCA calculation fails for selected
@@ -358,7 +376,7 @@ li:before {
'Graduated colour' option not offered for
- manually created features (where if feature score is Float.NaN)
+ manually created features (where feature score is Float.NaN)
Blank extra columns drawn or printed
@@ -474,23 +492,22 @@ li:before {
Structure colours not updated when associated tree
repartitions the alignment view (Regression in 2.10.5)
-
- Datamodel
-
- -
- Sequence.findIndex returns wrong value when
- sequence's End is greater than its length
-
- - Bugs fixed for Java 11 Support (not
- yet on general release)
-
- -
- Menus work properly in split-screen
-
-
+ Datamodel
+
+ -
+ Sequence.findIndex returns wrong value when
+ sequence's End is greater than its length
+
+ Bugs fixed for Java 11 Support (not yet on
+ general release)
+
+ -
+ Menus work properly in split-screen
+
New Known Defects
-
- - Select columns containing feature by double clicking ignores bounds of an existing selected region
+
+ -
+ Select columns containing feature by double clicking ignores bounds of an existing selected region
-
Codon consensus logo incorrectly scaled in gapped
@@ -519,7 +536,8 @@ li:before {
not shown as thresholded features in 2.11. To workaround please
create a Score filter instead.
- - Cancel on Feature Settings dialog doesn't reset group visibility
+ -
+ Cancel on Feature Settings dialog doesn't reset group visibility
-
F2 doesn't enable/disable keyboard mode in linked CDS/Protein view
@@ -527,15 +545,14 @@ li:before {
Closing tree windows with CMD/CTRL-W for
alignments with multiple views can close views unexpectedly
- - Java 11 Specific defects
+
+ Java 11 Specific defects
-
Jalview Properties file is not sorted
alphabetically when saved
-
-
-
+
|