X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=1ddc6e5ab56e912d7eaaf9a0e5353b43fa75f25e;hb=74f21ca6ca8fa17d53708e457d191e15904f8310;hp=996d060d617217a6f3de145d2e2620442fb8310b;hpb=0563c3cb3209568f7fde6badd53d73a907372ecb;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 996d060..1ddc6e5 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,6 +57,29 @@ li:before {
+ 2.11.1
+ 19/11/2019
+ |
+
+
+ Deprecations
+ |
+
+
+ Java 11 Compatibility issues
+
+ -
+ OSX - Can't view results in PDB/Uniprot FTS
+
+
+ |
+
+
+
2.11.0
04/07/2019
|
@@ -75,7 +98,7 @@ li:before {
File type associations for
- formats supported by jalview (including .jvp project files)
+ formats supported by Jalview (including .jvp project files)
Jalview launch files (.jvl) to pass command line
@@ -100,7 +123,6 @@ li:before {
IntervalStoreJ (NCList
implementation that allows updates) used for Sequence Feature collections
-
Sequence
features can be filtered and shaded according to any
associated attributes (e.g. variant attributes from VCF
@@ -176,7 +198,7 @@ li:before {
Alignment Overview now WYSIWIS (What you see is
- what is shown)
Only visible region of alignment is shown by
+ what is shown)
Only visible regions of alignment are shown by
default (can be changed in user preferences)
@@ -232,59 +254,55 @@ li:before {
Deprecations
- -
- DAS sequence retrieval and annotation
+
- DAS sequence retrieval and annotation
capabilities removed from the Jalview Desktop
- -
- Castor library for XML marshalling and
+
- Castor library for XML marshalling and
unmarshalling has been replaced by JAXB for Jalview projects
and XML based data retrieval clients
- Disable VAMSAS menu in preparation for removal
- Jalview Desktop no longer distributed via Java Web Start
Documentation
- -
- Added remarks about transparent rendering effects
+
- Added remarks about transparent rendering effects
not supported in EPS figure export
- Typos in documentation for Preferences dialog
Development and Release Processes
-
- Build system migrated from Ant to Gradle
+ Build system migrated from Ant to Gradle
- - Enhanced checks for missing and duplicated keys in Message bundles
+ -
+ Enhanced checks for missing and duplicated keys in Message bundles
-
- Eclipse project configuration managed with
+ Eclipse project configuration managed with
gradle-eclipse
-
- Atlassian
+ Atlassian
Bamboo continuous integration for unattended Test Suite
execution
-
- Memory test suite to detect leaks in common
+ Memory test suite to detect leaks in common
operations
-
- More unit test coverage, and minor
- issues resolved.
+ More unit test coverage, and minor
+ issues resolved
-
- Developer documentation migrated to
+ Developer documentation migrated to
markdown (with HTML rendering)
-
- HelpLinksChecker runs on Windows
+ HelpLinksChecker runs on Windows
-
- New URLs for publishing development
+ New URLs for publishing development
versions of Jalview
- -
-
-
@@ -327,8 +345,8 @@ li:before {
Settings and Jalview Preferences panels
- Jalview hangs when closing windows or the
- overview updates with large alignments
+ Jalview hangs when closing windows, or redrawing the
+ overview with large alignments
Tree and PCA calculation fails for selected
@@ -358,7 +376,7 @@ li:before {
'Graduated colour' option not offered for
- manually created features (where if feature score is Float.NaN)
+ manually created features (where feature score is Float.NaN)
Blank extra columns drawn or printed
@@ -474,23 +492,22 @@ li:before {
Structure colours not updated when associated tree
repartitions the alignment view (Regression in 2.10.5)
-
- Datamodel
-
- -
- Sequence.findIndex returns wrong value when
- sequence's End is greater than its length
-
- - Bugs fixed for Java 11 Support (not
- yet on general release)
-
- -
- Menus work properly in split-screen
-
-
+ Datamodel
+
+ -
+ Sequence.findIndex returns wrong value when
+ sequence's End is greater than its length
+
+ Bugs fixed for Java 11 Support (not yet on
+ general release)
+
+ -
+ Menus work properly in split-screen
+
New Known Defects
-
- - Select columns containing feature by double clicking ignores bounds of an existing selected region
+
+ -
+ Select columns containing feature by double clicking ignores bounds of an existing selected region
-
Codon consensus logo incorrectly scaled in gapped
@@ -519,7 +536,8 @@ li:before {
not shown as thresholded features in 2.11. To workaround please
create a Score filter instead.
- - Cancel on Feature Settings dialog doesn't reset group visibility
+ -
+ Cancel on Feature Settings dialog doesn't reset group visibility
-
F2 doesn't enable/disable keyboard mode in linked CDS/Protein view
@@ -527,15 +545,14 @@ li:before {
Closing tree windows with CMD/CTRL-W for
alignments with multiple views can close views unexpectedly
- - Java 11 Specific defects
+
+ Java 11 Specific defects
-
Jalview Properties file is not sorted
alphabetically when saved
-
-
-
+
|
@@ -555,7 +572,7 @@ li:before {
Hidden sequence markers and representative
sequence bolding included when exporting alignment as EPS,
SVG, PNG or HTML. Display is configured via the
- Format menu, or for command-line use via a jalview
+ Format menu, or for command-line use via a Jalview
properties file.
@@ -629,7 +646,7 @@ li:before {
.jvp should be used as default extension
- (not .jar) when saving a jalview project file.
+ (not .jar) when saving a Jalview project file.
Mac Users: closing a window correctly