X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=35123750f53ba496e217b92862b54a4449df7993;hb=d03224f51d9d4530763892e900982eff9ce21e2f;hp=00976552b5515cdbd9838c960da6c5205cc6ad26;hpb=97f3e2d00c3d8e671474e012b7db56bb58a6c468;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 0097655..3512375 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,14 +57,72 @@ li:before {
2.11.1.1
+ 13/07/2020 |
+
+
+
+ -
+ Shift+arrow keys navigate to next gap or
+ residue in cursor mode
+
+ -
+ Support import of VCF 4.3 by updating
+ HTSJDK from 2.12 to 2.23
+
+ -
+ IntervalStore library updated to v.1.1:
+ optimisations and improvements suggested by Bob Hanson and
+ improved compatibility with JalviewJS
+
+ -
+ Retrieve GZipped stockholm formatted alignments from Pfam and Rfam
+
+ -
+ Recognise GZipped content for URLs and File import (no longer based on .gz extension)
+
+
+
+ |
+
+
+ -
+ Escape does not clear highlights on the
+ alignment (Since Jalview 2.10.3)
+
+ -
+ Alt+Left or Right arrow in cursor mode
+ doesn't slide selected sequences
+
+ -
+ Peptide-to-CDS tracking broken when
+ multiple EMBL gene products shown for a single contig
+
+ -
+ Errors encountered when processing variants
+ from VCF files yield "Error processing VCF: Format specifier
+ '%s'" on the console
+
+ -
+ Count of features not shown can be wrong
+ when there are both local and complementary features mapped
+ to the position under the cursor
+
+
+ |
+
+
+ 2.11.1.0
- 9/04/2020 |
+ 22/04/2020
-
- Map 'virtual'
- codon features shown on protein (or vice versa) for display
- in alignments, on structure views and for export.
+ Map
+ 'virtual' codon features shown on protein (or vice versa)
+ for display in alignments, on structure views (including
+ transfer to UCSF chimera), in feature reports and for
+ export.
-
Feature attributes from VCF files can be
@@ -98,6 +156,9 @@ li:before {
Warn if Sort by Score or Density attempted
with no feature types visible
+ -
+ Improved support for filtering feature attributes with large integer values
+
Jalview Installer
-
@@ -139,6 +200,11 @@ li:before {
to stdout containing the consensus sequence for each
alignment in a Jalview session
+ -
+ ComputePeptideVariants.groovy to translate
+ genomic sequence_variant annotation from CDS as
+ missense_variant or synonymous_variant on protein products.
+
|
@@ -148,6 +214,11 @@ li:before {
'Show hidden markers' option is not ticked
+ Hidden sequence markers not shown in EPS and
+ PNG output when 'Automatically set ID width' is set in
+ jalview preferences or properties file
+
+
Feature Editor dialog can be opened when
'Show Sequence Features' option is not ticked
@@ -201,6 +272,11 @@ li:before {
Credits missing some authors in Jalview
help documentation for 2.11.0 release
+
+ Export of Pfam alignment as Stockholm
+ includes Pfam ID as sequence's accession rather than its
+ Uniprot Accession
+
Java 11 Compatibility issues
|