X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=4c72658d6b7ac8bdc490a2fda8c4998e24b39ab5;hb=7ae11f7f7f00549c6fb3af9ee193dc103a3c8de8;hp=6b40e9e68848c2ed35a8fdb1e83ed6db684574ee;hpb=85790ca3d7045beadce242ca0c9a2b39a3a833b4;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 6b40e9e..4c72658 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -55,13 +55,120 @@ li:before {
| New Features |
Issues Resolved |
+ 2.11.1.4
+ 08/02/2021 |
+ Improved control of
+ Jalview's use of network services
+
+ -
+ New .jalview_properties token controlling
+ launch of the news browser (like -nonews argument)
+
+ -
+ New .jalview_properties token controlling
+ download of linkout URLs from
+ www.jalview.org/services/identifiers
+
+ -
+ New .jalview_properties token controlling
+ download of BIOJSHTML templates
+
+ -
+ New 'Discover Web Services' option to trigger
+ a one off JABAWS discovery if autodiscovery was disabled
+
+ |
+
+
+ |
+
+
+ 2.11.1.3
+ 29/10/2020 |
+
+
+ |
+
+
+ -
+ Find doesn't always highlight all matching
+ positions in a sequence (bug introduced in 2.11.1.2)
+
+ -
+ Alignments containing one or more protein
+ sequences can be classed as nucleotide
+
+ -
+ CDS alignment doesn't match original CDS
+ sequences after alignment of protein products (known defect
+ first reported for 2.11.1.0)
+
+ -
+ No tooltip or popup menu for genomic
+ features outwith CDS shown overlaid on protein
+
+ -
+ Overlapping CDS in ENA accessions are not
+ correctly mapped by Jalview (e.g. affects viral CDS with
+ ribosomal slippage, since 2.9.0)
+
+ -
+ Spliced transcript CDS sequences don't show
+ CDS features
+
+ -
+ Selections in CDS sequence panel don't
+ always select corresponding protein sequences
+
+ -
+ Make groups from selection for a
+ column selection doesn't always ignore hidden columns
+
+ Installer
+
+ -
+ Space character in Jalview install path on
+ Windows prevents install4j launching getdown
+
+ Development
+
+ -
+ Fixed typos and specified compatible gradle
+ version numbers in doc/building.md
+
+
+ |
+
+
+ 2.11.1.2
+ 25/09/2020 |
+
+
+ |
+
+
+ -
+ Fresh install of Jalview 2.11.1.1 reports
+ "Encountered problems opening
+ https://www.jalview.org/examples/exampleFile_2_7.jvp"
+
+
+ |
+
2.11.1.1
- 11/08/2020 |
+ 17/09/2020
-
-
Shift+arrow keys navigate to next gap or
residue in cursor mode
@@ -116,7 +223,7 @@ li:before {
-
Improved built-in documentation and command
line help for configuring Jalview's memory
-
+
|
@@ -136,6 +243,10 @@ li:before {
doesn't slide selected sequences, just sequence under cursor
+ Alt+Up/Down in cursor mode doesn't move
+ sequence under the cursor
+
+
Peptide-to-CDS tracking broken when
multiple EMBL gene products shown for a single contig
@@ -182,6 +293,21 @@ li:before {
file again, and if that fails, delete the original file and
save in place.)
+
+ Cannot process alignments from HTTPS urls
+ via command line
+
+
+ References to http://www.jalview.org in
+ program and documentation
+
+ Launching Jalview
+
+ -
+ Jalview application fails when launched the
+ first time for a version that has different jars to the
+ previous launched version.
+
Developing Jalview
-
@@ -189,9 +315,19 @@ li:before {
data, causing cloverReport gradle task to fail with an
OutOfMemory error.
+ -
+ Migrated the Jalview Version Checker to
+ monitor the release channel
+
New Known defects
-
+ CDS shown in result of submitting proteins
+ in a CDS/Protein alignment to a web service is wrong when
+ proteins share a common transcript sequence (e.g.
+ genome of RNA viruses)
+
+ -
Co-located features exported and re-imported
are ordered differently when shown on alignment and in
tooltips. (Also affects v2.11.1.0)
@@ -209,6 +345,11 @@ li:before {
Sequence ID colourscheme not re-applied
when alignment view restored from project (since Jalview 2.11.0)
+ -
+ Duplicate CDS sequences are generated when
+ protein products for certain ENA records are repeatedly
+ shown via Calculate->Show Cross Refs
+
|