X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=5b6180d084faa935e8dbaf10b05ea428020844f5;hb=49db0dff1da16c3355b43a41498c1fc93ef47e91;hp=0e3e652d2f68e08641c71d44ca04985298b1b791;hpb=6ac89f1f1acdd697eb27d1b0e776c7cde0563002;p=jalview.git

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 0e3e652..5b6180d 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,226 +57,6 @@ li:before {
     </tr>
     <tr>
       <td width="60" align="center" nowrap><strong><a
-          id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.3">.3</a><br />
-          <em>27/10/2020</em></strong></td>
-      <td align="left" valign="top">
-        <ul>
-        </ul>
-      </td>
-      <td align="left" valign="top">
-        <ul>
-          <li>
-            <!-- JAL-3765 -->Find doesn't always highlight all matching
-            positions in a sequence
-          </li>
-        </ul>
-      </td>
-    </tr>
-    <tr>
-      <td width="60" align="center" nowrap><strong><a
-          id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.2">.2</a><br />
-          <em>25/09/2020</em></strong></td>
-      <td align="left" valign="top">
-        <ul>
-        </ul>
-      </td>
-      <td align="left" valign="top">
-        <ul>
-          <li>
-            <!-- JAL-3757 -->Fresh install of Jalview 2.11.1.1 reports
-            "Encountered problems opening
-            https://www.jalview.org/examples/exampleFile_2_7.jvp"
-          </li>
-        </ul>
-      </td>
-    </tr>
-    <tr>
-      <td width="60" align="center" nowrap><strong><a
-          id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.1">.1</a><br />
-          <em>17/09/2020</em></strong></td>
-      <td align="left" valign="top">
-        <ul>
-          <li>
-            <!-- JAL-3638 -->Shift+arrow keys navigate to next gap or
-            residue in cursor mode
-          </li>
-          <li>
-            <!-- JAL-3695 -->Support import of VCF 4.3 by updating
-            HTSJDK from 2.12 to 2.23
-          </li>
-          <li>
-            <!-- JAL-3621 -->IntervalStore library updated to v.1.1:
-            optimisations and improvements suggested by Bob Hanson and
-            improved compatibility with JalviewJS
-          </li>
-          <li>
-            <!-- JAL-3615 -->Retrieve GZipped stockholm formatted
-            alignments from Pfam and Rfam
-          </li>
-          <li>
-            <!-- JAL-2656 -->Recognise GZipped content for URLs and File
-            import (no longer based on .gz extension)
-          </li>
-          <li>
-            <!-- JAL-3570 -->Updated Spanish Translation for 2.11.1
-          </li>
-          <li>
-            <!-- JAL-3692 -->Migrate EMBL record retrieval to use latest
-            ENA Browser (https://www.ebi.ac.uk/ena/browser/home) and
-            EMBL flat file
-          </li>
-          <li>
-            <!-- JAL-3667 -->Improved warning messages, debug logging
-            and fixed Retry action when Jalview encounters errors when
-            saving or making backup files.
-          </li>
-          <li>
-            <!-- JAL-3676 -->Enhanced Jalview Java Console:
-            <ul>
-              <li>Jalview's logging level can be configured</li>
-              <li>Copy to Clipboard Buttion</li>
-            </ul>
-          </li>
-          <li>
-            <!-- JAL-3541 -->Improved support for Hi-DPI (4K) screens
-            when running on Linux (Requires Java 11+)
-          </li>
-        </ul> <em>Launching Jalview</em>
-        <ul>
-          <li>
-            <!-- JAL-3608 -->Configure Jalview Desktop's look and feel
-            through a system property
-          </li>
-          <li>
-            <!-- JAL-3477 -->Improved built-in documentation and command
-            line help for configuring Jalview's memory
-          </li>                   
-        </ul>
-      </td>
-      <td align="left" valign="top">
-        <ul>
-          <li>
-            <!-- JAL-3691 -->Conservation and Quality tracks are shown
-            but not calculated and no protein or DNA score models are
-            available for tree/PCA calculation when launched with
-            Turkish language locale
-          </li>
-          <li>
-            <!-- JAL-3493 -->Escape does not clear highlights on the
-            alignment (Since Jalview 2.10.3)
-          </li>
-          <li>
-            <!--  JAL-3680 -->Alt+Left or Right arrow in cursor mode
-            doesn't slide selected sequences, just sequence under cursor
-          </li>
-          <li>
-            <!-- JAL-3732 -->Alt+Up/Down in cursor mode doesn't move
-            sequence under the cursor
-          </li>
-          <li>
-            <!-- JAL-3613 -->Peptide-to-CDS tracking broken when
-            multiple EMBL gene products shown for a single contig
-          </li>
-          <li>
-            <!-- JAL-3696 -->Errors encountered when processing variants
-            from VCF files yield "Error processing VCF: Format specifier
-            '%s'" on the console
-          </li>
-          <li>
-            <!-- JAL-3697 -->Count of features not shown can be wrong
-            when there are both local and complementary features mapped
-            to the position under the cursor
-          </li>
-          <li>
-            <!-- JAL-3673 -->Sequence ID for reference sequence is
-            clipped when Right align Sequence IDs enabled
-          </li>
-          <li>
-            <!-- JAL-2983 -->Slider with negative range values not
-            rendered correctly in VAqua4 (Since 2.10.4)
-          </li>
-          <li>
-            <!-- JAL-3685 -->Single quotes not displayed correctly in
-            internationalised text for some messages and log output
-          </li>
-          <li>
-            <!-- JAL-3490 -->Find doesn't report matches that span
-            hidden gapped columns
-          </li>
-          <li>
-            <!-- JAL-3597 -->Resolved memory leaks in Tree and PCA
-            panels, Alignment viewport and annotation renderer.
-          </li>
-          <li>
-            <!-- JAL-3561 -->Jalview ignores file format parameter
-            specifying output format when exporting an alignment via the
-            command line
-          </li>
-          <li>
-            <!-- JAL-3667 -->Windows 10: For a minority of users, if
-            backups are not enabled, Jalview sometimes fails to
-            overwrite an existing file and raises a warning dialog. (in
-            2.11.0, and 2.11.1.0, the workaround is to try to save the
-            file again, and if that fails, delete the original file and
-            save in place.)
-          </li>
-          <li>
-            <!-- JAL-3750 -->Cannot process alignments from HTTPS urls
-            via command line
-          </li>
-          <li>
-            <!-- JAL-3741 -->References to http://www.jalview.org in
-            program and documentation
-          </li>
-        </ul> <em>Launching Jalview</em>
-        <ul>
-          <li>
-            <!-- JAL-3718 -->Jalview application fails when launched the
-            first time for a version that has different jars to the
-            previous launched version.
-          </li>
-        </ul> <em>Developing Jalview</em>
-        <ul>
-          <li>
-            <!-- JAL-3541 -->Fixed issue with cleaning up old coverage
-            data, causing cloverReport gradle task to fail with an
-            OutOfMemory error.
-          </li>
-          <li>
-            <!-- JAL-3280 -->Migrated the Jalview Version Checker to
-            monitor the release channel
-          </li>
-        </ul> <em>New Known defects</em>
-        <ul>
-          <li>
-            <!-- JAL-3748 -->CDS shown in result of submitting proteins
-            in a CDS/Protein alignment to a web service is wrong when
-            proteins share a common transcript sequence (e.g.
-            genome of RNA viruses)
-          </li>
-          <li>
-            <!-- JAL-3576 -->Co-located features exported and re-imported
-            are ordered differently when shown on alignment and in
-            tooltips. (Also affects v2.11.1.0)
-          </li>
-          <li>
-            <!-- JAL-3702 -->Drag and drop of alignment file onto
-            alignment window when in a HiDPI scaled mode in Linux only
-            works for the top left quadrant of the alignment window
-          </li>
-          <li>
-            <!-- JAL-3701 -->Stale build data in jalview standalone jar
-            builds (only affects 2.11.1.1 branch)
-          </li>
-          <li>
-            <!-- JAL-3127 -->Sequence ID colourscheme not re-applied
-            when alignment view restored from project (since Jalview 2.11.0)
-          </li>
-        </ul>
-      </td>
-    </tr>
-    <tr>
-      <td width="60" align="center" nowrap><strong><a
           id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.0">.0</a><br />
           <em>22/04/2020</em></strong></td>
       <td align="left" valign="top">