X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=6585399fd14e34a6338fafa1d659eed877f98851;hb=40aa3a0c5441c8e42ec8e25c40b43b9cf31eaac1;hp=eac0445f696b0899fbe7d55c81e702b561efcf10;hpb=657c77bd297906d426e803a3e6ad7f78a67d62a7;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index eac0445..6585399 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,23 +57,62 @@ li:before {
2.11.1.0
- 16/2/2020 |
+ id="Jalview.2.11.1">2.11.1.0
+ 27/03/2020
- - Feature attributes from VCF files can be exported and re-imported as GFF3 files
+
-
+ Option to show 'virtual' codon features on
+ protein (or vice versa)
+
+ -
+ Option to export virtual features if
+ shown
+
+ -
+ Option to transfer virtual features to
+ Chimera
+
+
-
- Record "fixed column" values POS, ID, QUAL, FILTER from VCF as Feature Attributes
+ Feature attributes from VCF files can be exported and re-imported as GFF3 files
-
- More robust VCF numeric data field validation
- while parsing (e.g. AF* attributes)
+ Capture VCF "fixed column" values POS,
+ ID, QUAL, FILTER as Feature Attributes
+
+ -
+ More robust VCF numeric data field validation while parsing
-
-
-
+ Feature Settings dialog keeps same screen position if reopened
+
+ -
+ Font anti-aliasing in alignment views enabled by default
+
+ -
+ Very long feature descriptions truncated in tooltips and menus
+
+ -
+ Warn if Sort by Score or Density attempted with no feature types visible
+
+ Jalview Installer
+
+ -
+ Versions for install4j and getdown and installer template version reported
+ in console (may be null when Jalview launched as executable jar or via conda)
+ -
+ Layout improvements for OSX .dmg Finder and higher quality background images
+
+ -
+ New installer/application launcher generated with install4j 8.0.4
+
+ -
+ Jalview File Associations shown for Unix Platforms
+ -
+ Improved defaults for maximum memory setting when running on large memory machines
Release processes
-
@@ -88,12 +127,32 @@ li:before {
Test code included in Clover coverage
report
- Deprecations
+
+
+ Groovy Scripts
+
+ -
+ exportconsensus.groovy prints a FASTA
+ file to stdout containing the consensus sequence for each
+ alignment in a Jalview session
+
+
+
|
-
-
+ Undo 'Null' operation shown after sort by
+ buttons in Feature Settings dialog are clicked when no
+ features are visible
+
+ -
+ ID margins for CDS and Protein views not
+ equal when split frame is first opened
+
+ -
+ Sequence position numbers in status bar not
+ correct after editing a sequence's start position
-
Alignment is misaligned in wrapped mode
@@ -117,23 +176,35 @@ li:before {
feature settings dialog also selects columns
-
- SpinnerNumberModel causing
+ SpinnerNumberModel causes
IllegalArgumentException in some circumstances
-
+ Multiple feature settings dialogs can be opened for a view
+
+ -
+ Feature Settings dialog is orphaned if alignment window is closed
+
+ -
Credits missing some authors in Jalview
help documentation for 2.11.0 release
Java 11 Compatibility issues
-
- OSX - Can't view results in PDB/Uniprot FTS
+ OSX - Can't view some search results in PDB/Uniprot search panel
+
+ Installer
+
+ - Jalview should not create file associations for 3D structure files (.pdb, .mmcif. .cif)
Repository and Source Release
-
- removed redundant .gitignore files from
- repository
+ removed obsolete .cvsignore files from repository
+
+ -
+ Clover report generation running out of memory
New Known Issues
@@ -148,6 +219,9 @@ li:before {
clipped in headless figure export when Right Align option
enabled
+
+ Jalview Installation type always reports 'Source' in console output
+
|