X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=940c08e036848b20862139947f26761d99775d94;hb=402524cc3e4ea724e4c4c43fc9590673a361163d;hp=109bd0e4ab7c65312c2d9a9df80ffeb8b9508359;hpb=c902ed8d8708cf273963f4d08e2fd46d06280e0c;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 109bd0e..940c08e 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -59,7 +59,7 @@ li:before {
2.11.2.0
- 3/03/2022 |
+ 8/03/2022
-
@@ -100,6 +100,16 @@ li:before {
Support for Canonical Uniprot IDs
-
+ Sequence IDs split on '_' as well as other
+ non-alphanumerics when discovering database references with
+ 'Fetch DB Refs'
+
+ -
+ Suppressed harmless exceptions output to
+ Console whilst discovering database references for a
+ sequence
+
+ -
Updated Jalview bindings for Uniprot XML
schema
@@ -108,23 +118,70 @@ li:before {
disabled by default
-
-
+ -nowebservicediscovery command line
+ argument to prevent automatic discovery of analysis
+ webservices on launch
-
- JalviewJS
+
+ Allow 'App' directories to be opened when
+ locating Chimera, ChimeraX or Pymol binaries via filechooser
+ opened by double clicking the Structure Preferences' path
+ textbox
+
+
+ support for HTTP/S access via
+ proxies that require authentication
+
+
+ New mechanism for opening URLs with system
+ default browser (works on OSX and Linux as well as Windows)
+
+
+ GPL license info on splash screen and About
+ text
+
+
+ Jalview Native App
-
- PDB structures mapped to Uniprot Sequences with
- SIFTS
+ New Jalview Develop app - making it even easier
+ to get at Jalview's development builds
-
-
+ New splashscreens for Jalview, Jalview Test
+ and Jalview Develop applications.
-
-
+ Jalview logos shown for Jalview Java
+ Console and other window widgets in taskbar and dock rather
+ than anonymous 'Java' icons
-
-
+ Options to allow user to choose the (Swing) Look and Feel (LaF) used by Jalview
+
+ -
+ Metal LaF used to improved operation on Linux Ubuntu with
+ HiDPI display in Java 11 (still known issues with HiDPI screens in java
+ 8 and 11. see JAL-3137)
+
+ -
+ New command line launcher scripts (.sh, .ps1, .bat) usable on
+ macOS, Linux/Unix, Windows and documentation in Help. Installer wizard has option
+ to add this to PATH, or link to it in your PATH.
+
+ -
+ Getdown launcher inherits HTTP/S proxy
+ configuration from jalview_properties
+
+ JalviewJS
+
+ -
+ PDB structures mapped to Uniprot Sequences with
+ SIFTS
+
+ -
+ setprop commandline argument reinstated for JalviewJS only
-
Missing message bundle keys are only
@@ -160,6 +217,10 @@ li:before {
installation with a customizedId of "JALVIEW" in install4j's
Jalview Launcher
+ -
+ Improved compatibility of Jalview build
+ with Java 17 (next LTS target)
+
@@ -217,6 +278,10 @@ li:before {
Can open multiple Preferences panels
+ Properly configure HTTPS proxy settings
+ from Preferences
+
+
Standard out logging broken: messages only
routing to stderr and appear as a raw template
@@ -262,6 +327,14 @@ li:before {
+ Known Issues
+
+ -
+ Display of RESNUM sequence features are not
+ suppressed when structures associated with a sequence are
+ viewed with an external viewer (Regression from 2.11.1 series)
+
+
|
@@ -504,6 +577,12 @@ li:before {
Improved support for Hi-DPI (4K) screens
when running on Linux (Requires Java 11+)
+
+ RESNUM sequence features (the
+ green ones) are not automatically displayed when associated
+ structures are displayed or for sequences retrieved from the
+ PDB.
+
Launching Jalview
-
@@ -584,6 +663,11 @@ li:before {
save in place.)
-
+ Dragging a PDB file onto an alignment with
+ sequence features displayed causes displayed features to be
+ hidden.
+
+ -
Cannot process alignments from HTTPS urls
via command line