X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=94426410bbe90b8ec4ec8fbbbaff9ef6b84f4214;hb=0b6d277e8fc98b1bc61d040932dba670340db344;hp=082146ef5a4b439580cb85bad1316d1cbbd15c88;hpb=e1932a723036ee3a5814c840ccaaa5f13029e821;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 082146e..9442641 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -58,44 +58,48 @@ li:before {
2.11.1.0
- 27/03/2020 |
+ 22/04/2020
-
- Option to show 'virtual' codon features on
- protein (or vice versa)
-
- -
- Option to export virtual features if
- shown
-
- -
- Option to transfer virtual features to
- Chimera
-
-
+ Map 'virtual'
+ codon features shown on protein (or vice versa) for display
+ in alignments, on structure views, in feature reports and for export.
-
- Feature attributes from VCF files can be exported and re-imported as GFF3 files
+ Feature attributes from VCF files can be
+ exported and re-imported as GFF3 files
-
- Capture VCF "fixed column" values POS,
- ID, QUAL, FILTER as Feature Attributes
+ Capture VCF "fixed column" values
+ POS, ID, QUAL, FILTER as Feature Attributes
-
- More robust VCF numeric data field validation while parsing
+ More robust VCF numeric data field
+ validation while parsing
-
- Feature Settings dialog keeps same screen position if reopened
-
+ Feature Settings dialog keeps same screen
+ position if reopened
+
-
- Font anti-aliasing in alignment views enabled by default
-
+ Feature Settings dialog title includes name
+ of associated view
+
-
- Very long feature descriptions truncated in tooltips and menus
-
+ Font anti-aliasing in alignment views
+ enabled by default
+
-
- Warn if Sort by Score or Density attempted with no feature types visible
+ Very long feature descriptions truncated in
+ tooltips and menus
+
+ -
+ Warn if Sort by Score or Density attempted
+ with no feature types visible
+
+ -
+ Improved support for filtering feature attributes with large integer values
Jalview Installer
@@ -118,6 +122,9 @@ li:before {
-
New point release version scheme - 2.11.1.0
+ -
+ 'Jalview Test' installers/apps for easier access to test-release channel builds
+
Build System
-
@@ -128,20 +135,31 @@ li:before {
report
-
- Groovy Scripts
-
- -
- exportconsensus.groovy prints a FASTA
- file to stdout containing the consensus sequence for each
- alignment in a Jalview session
-
-
+ Groovy Scripts
+
+ -
+ exportconsensus.groovy prints a FASTA file
+ to stdout containing the consensus sequence for each
+ alignment in a Jalview session
+
+ -
+ ComputePeptideVariants.groovy to translate
+ genomic sequence_variant annotation from CDS as
+ missense_variant or synonymous_variant on protein products.
+
|
-
+ Hidden sequence markers still visible when
+ 'Show hidden markers' option is not ticked
+
+ -
+ Feature Editor dialog can be opened when
+ 'Show Sequence Features' option is not ticked
+
+ -
Undo 'Null' operation shown after sort by
buttons in Feature Settings dialog are clicked when no
features are visible
@@ -191,6 +209,11 @@ li:before {
Credits missing some authors in Jalview
help documentation for 2.11.0 release
+ -
+ Export of Pfam alignment as Stockholm
+ includes Pfam ID as sequence's accession rather than its
+ Uniprot Accession
+
Java 11 Compatibility issues
-
@@ -229,6 +252,13 @@ li:before {
Jalview Installation type always reports
'Source' in console output
+ -
+ Test Suite: Certain Functional tests fail on jalview's
+ bamboo server but run fine locally.
+
+ -
+ Filtering features by genomic location (POS) is broken by rounding
+
|