X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=a2e3d6164cc300647913ea18b8657e901dbeb745;hb=940d18951d460f9f3f0be6472327e68d09e480fe;hp=13e2ae80a9e2deda1835c9d81550761a695cfac8;hpb=325d9af46f90ec58df53d6a0384bf3afbff6d5ab;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 13e2ae8..a2e3d61 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,13 +57,54 @@ li:before {
2.11.1.0
- 16/2/2020 |
+ id="Jalview.2.11.1">2.11.1.0
+ 27/03/2020
-
-
+ Option to show 'virtual' codon features on protein (or vice versa)
+ -
+ Option to export virtual features if shown
+
+ -
+ Option to transfer virtual features to Chimera
+
+ -
+ Feature attributes from VCF files can be exported and re-imported as GFF3 files
+
+ -
+ Capture VCF "fixed column" values POS,
+ ID, QUAL, FILTER as Feature Attributes
+
+ -
+ More robust VCF numeric data field validation while parsing
+
+ -
+ Feature Settings dialog keeps same screen position if reopened
+
+ -
+ Font anti-aliasing in alignment views enabled by default
+
+ -
+ Very long feature descriptions truncated in tooltips and menus
+
+ Jalview Installer
+
+ -
+ Versions for install4j and getdown and installer template version reported
+ in console (may be null when Jalview launched as executable jar or via conda)
+
+ -
+ Layout improvements for OSX .dmg Finder and higher quality background images
+
+ -
+ New installer/application launcher generated with install4j 8.0.4
+
+ -
+ Jalview File Associations shown for Unix Platforms
+ -
+ Improved defaults for maximum memory setting when running on large memory machines
Release processes
-
@@ -78,18 +119,24 @@ li:before {
Test code included in Clover coverage
report
- Deprecations
+
|
-
-
+ ID margins for CDS and Protein views not equal when split frame is first opened
-
-
+ Sequence position numbers in status bar not correct after editing a sequence's start position
-
-
+ Alignment is misaligned in wrapped mode
+ with annotation and exceptions thrown when only a few
+ columns shown in wrapped mode
+
+ -
+ Sequence IDs missing in headless export of
+ wrapped alignment figure with annotations
-
Sorting Structure Chooser table by Sequence
@@ -104,23 +151,51 @@ li:before {
feature settings dialog also selects columns
-
- SpinnerNumberModel causing
+ SpinnerNumberModel causes
IllegalArgumentException in some circumstances
-
+ Multiple feature settings dialogs can be opened for a view
+
+ -
+ Feature Settings dialog is orphaned if alignment window is closed
+
+ -
Credits missing some authors in Jalview
help documentation for 2.11.0 release
Java 11 Compatibility issues
-
- OSX - Can't view results in PDB/Uniprot FTS
+ OSX - Can't view some search results in PDB/Uniprot search panel
+
+ Installer
+
+ - Jalview should not create file associations for 3D structure files (.pdb, .mmcif. .cif)
Repository and Source Release
-
- removed redundant .gitignore files from
- repository
+ removed obsolete .cvsignore files from repository
+
+ -
+ Clover report generation running out of memory
+
+
+ New Known Issues
+
+ -
+ OSX - Current working directory not
+ preserved when Jalview.app launched with parameters from
+ command line
+
+ -
+ Sequence IDs aligned to wrong margin and
+ clipped in headless figure export when Right Align option
+ enabled
+
+ -
+ Jalview Installation type always reports 'Source' in console output
|