X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=b64c24caee5b6d43cfc15c855f13f810f834a66a;hb=32deb2b9a173873736b62c2999b9145cb63f84b2;hp=d4cba2561c716fc28f1cb4f2b24c0994ed667e63;hpb=221d973075512e015f7c13332c77162ea6b5e7bb;p=jalview.git

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index d4cba25..b64c24c 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,8 +57,8 @@ li:before {
     </tr>
     <tr>
       <td width="60" align="center" nowrap>
-          <strong><a name="Jalview.2.11">2.11</a><br />
-            <em>27/06/2019</em></strong>
+          <strong><a name="Jalview.2.11.0">2.11.0</a><br />
+            <em>02/07/2019</em></strong>
       </td>
       <td align="left" valign="top">
         <ul>
@@ -98,7 +98,7 @@ li:before {
 						<ul>
 						          <li>
             <!-- JAL-3140 JAL-2446 -->IntervalStoreJ (NCList
-            implementation that alows updates) used for Sequence Feature collections</li>
+            implementation that allows updates) used for Sequence Feature collections</li>
           <li>
 							<li>
 								<!-- JAL-2808,JAL-2069 -->Sequence features can be filtered and
@@ -107,6 +107,10 @@ li:before {
 								column 9 of GFF file)
 							</li>
 							<li>
+								<!-- JAL-3334 -->Use full Sequence Ontology (via BioJava) to
+								recognise variant features
+							</li>
+							<li>
 								<!-- JAL-2897 -->Show synonymous codon variants on peptide
 								sequences
 							</li>
@@ -134,7 +138,7 @@ li:before {
 								<!-- JAL-1767,JAL-2647 -->Principal Components Analysis results
 								and Viewer state saved in Jalview Project
 							</li>
-							<li>'Change parameters' option removed from viewer's
+							<li><!-- JAL-2962 -->'Change parameters' option removed from viewer's
 								drop-down menus</li>
 							<li>
 								<!-- JAL-2975 -->Can use shift + arrow keys to rotate PCA image
@@ -239,6 +243,7 @@ li:before {
 						<!-- JAL-3003 -->Added remarks about transparent rendering effects
 						not supported in EPS figure export
 					</li>
+					<li><!-- JAL-2903 -->Typos in documentation for Preferences dialog</li>
 				</ul> <em>Development and Release Processes</em>
         <ul>
         	<li>
@@ -316,14 +321,19 @@ li:before {
 						doesn't tell users the invalid URL
 					</li>
 					<li>
-						<!-- JAL-3178 -->Nonpositional features lose feature group on
-						export as Jalview features file
-					</li>
-					<li>
 						<!-- JAL-2816 -->Tooltips displayed for features filtered by
 						score from view
 					</li>
 					<li>
+						<!-- JAL-3330 -->Sequence Variants retrieved from Ensembl during
+						show cross references or Fetch Database References are shown in
+						red in original view
+					</li>
+          <li>
+            <!-- JAL-2898 -->stop_gained variants not shown correctly on
+            peptide sequence
+          </li>
+					<li>
 						<!-- JAL-2060 -->'Graduated colour' option not offered for
 						manually created features (where if feature score is Float.NaN)
 					</li>
@@ -408,10 +418,6 @@ li:before {
 						shown in complementary view
 					</li>
 					<li>
-						<!-- JAL-2898 -->stop_gained variants not shown correctly on
-						peptide sequence
-					</li>
-					<li>
 						<!-- JAL-3313 -->Codon consensus incorrectly scaled when shown
 						without normalisation
 					</li>
@@ -442,10 +448,17 @@ li:before {
 						<!-- JAL-868 -->Structure colours not updated when associated tree
 						repartitions the alignment view (Regression in 2.10.5)
 					</li>
-
 				</ul>
-				<em>New Known Defects</em>
+				<em>Datamodel</em>
+				<ul>
+					<li>
+						<!-- JAL-2986 -->Sequence.findIndex returns wrong value when
+						sequence's End is greater than its length
+					</li>
+				</ul> <em>New Known Defects</em>
 				<ul>
+				<li><!-- JAL-3340 -->Select columns containing feature by double clicking ignores bounds of an existing selected region
+				</li>
 					<li>
 						<!-- JAL-3313 -->Codon consensus logo incorrectly scaled in gapped
 						regions of protein alignment.
@@ -473,6 +486,10 @@ li:before {
 						not shown as thresholded features in 2.11. To workaround please
 						create a Score filter instead.
 					</li>
+					<li><!-- JAL-3184 -->Cancel on Feature Settings dialog doesn't reset group visibility</li> 
+					<li>
+					<!-- JAL-3338 -->F2 doesn't enable/disable keyboard mode in linked CDS/Protein view
+					</li>
 					 <li><strong>Java 11 Specific defects</strong>
             <ul>
               <li>