X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=c83741a1082d50a442bb8a250dd0d84aa378bc49;hb=a39aca0519f2fba1c0706e295831008da951608d;hp=fa70d64fb06077f44dc1cadfc4a5671754dbab18;hpb=c7a6b7267536fdb9bb9c61eb2971c4ef4c805edb;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index fa70d64..c83741a 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,14 +57,31 @@ li:before {
2.11.1.1
+ 13/07/2020 |
+
+
+ |
+
+
+ - Escape does not clear highlights on the alignment (Since Jalview 2.10.3)
+
+ |
+
+
+ 2.11.1.0
- 27/03/2020 |
+ 22/04/2020
-
- Map 'virtual'
- codon features shown on protein (or vice versa) for display
- in alignments, on structure views and for export.
+ Map
+ 'virtual' codon features shown on protein (or vice versa)
+ for display in alignments, on structure views (including
+ transfer to UCSF chimera), in feature reports and for
+ export.
-
Feature attributes from VCF files can be
@@ -83,6 +100,10 @@ li:before {
position if reopened
-
+ Feature Settings dialog title includes name
+ of associated view
+
+ -
Font anti-aliasing in alignment views
enabled by default
@@ -94,6 +115,9 @@ li:before {
Warn if Sort by Score or Density attempted
with no feature types visible
+ -
+ Improved support for filtering feature attributes with large integer values
+
Jalview Installer
-
@@ -115,6 +139,9 @@ li:before {
-
New point release version scheme - 2.11.1.0
+ -
+ 'Jalview Test' installers/apps for easier access to test-release channel builds
+
Build System
-
@@ -125,20 +152,36 @@ li:before {
report
-
- Groovy Scripts
-
- -
- exportconsensus.groovy prints a FASTA
- file to stdout containing the consensus sequence for each
- alignment in a Jalview session
-
-
+ Groovy Scripts
+
+ -
+ exportconsensus.groovy prints a FASTA file
+ to stdout containing the consensus sequence for each
+ alignment in a Jalview session
+
+ -
+ ComputePeptideVariants.groovy to translate
+ genomic sequence_variant annotation from CDS as
+ missense_variant or synonymous_variant on protein products.
+
|
-
+ Hidden sequence markers still visible when
+ 'Show hidden markers' option is not ticked
+
+ -
+ Hidden sequence markers not shown in EPS and
+ PNG output when 'Automatically set ID width' is set in
+ jalview preferences or properties file
+
+ -
+ Feature Editor dialog can be opened when
+ 'Show Sequence Features' option is not ticked
+
+ -
Undo 'Null' operation shown after sort by
buttons in Feature Settings dialog are clicked when no
features are visible
@@ -188,6 +231,11 @@ li:before {
Credits missing some authors in Jalview
help documentation for 2.11.0 release
+ -
+ Export of Pfam alignment as Stockholm
+ includes Pfam ID as sequence's accession rather than its
+ Uniprot Accession
+
Java 11 Compatibility issues
-
@@ -226,6 +274,10 @@ li:before {
Jalview Installation type always reports
'Source' in console output
+ -
+ Test Suite: Certain Functional tests fail on jalview's
+ bamboo server but run fine locally.
+
|