X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=d3f242073b1f3c83d1b7789a196b7184d7f1a9c8;hb=2720003e4d3537f99f6c1643561cbdb3d0120d2d;hp=a2e3d6164cc300647913ea18b8657e901dbeb745;hpb=940d18951d460f9f3f0be6472327e68d09e480fe;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index a2e3d61..d3f2420 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -58,37 +58,46 @@ li:before {
2.11.1.0
- 27/03/2020 |
+ 22/04/2020
-
- Option to show 'virtual' codon features on protein (or vice versa)
+ Map 'virtual'
+ codon features shown on protein (or vice versa) for display
+ in alignments, on structure views, in feature reports and for export.
-
- Option to export virtual features if shown
+ Feature attributes from VCF files can be
+ exported and re-imported as GFF3 files
-
- Option to transfer virtual features to Chimera
+ Capture VCF "fixed column" values
+ POS, ID, QUAL, FILTER as Feature Attributes
-
- Feature attributes from VCF files can be exported and re-imported as GFF3 files
+ More robust VCF numeric data field
+ validation while parsing
-
- Capture VCF "fixed column" values POS,
- ID, QUAL, FILTER as Feature Attributes
+ Feature Settings dialog keeps same screen
+ position if reopened
-
- More robust VCF numeric data field validation while parsing
+ Feature Settings dialog title includes name
+ of associated view
-
- Feature Settings dialog keeps same screen position if reopened
-
+ Font anti-aliasing in alignment views
+ enabled by default
+
-
- Font anti-aliasing in alignment views enabled by default
-
+ Very long feature descriptions truncated in
+ tooltips and menus
+
-
- Very long feature descriptions truncated in tooltips and menus
-
+ Warn if Sort by Score or Density attempted
+ with no feature types visible
+
Jalview Installer
-
@@ -110,6 +119,9 @@ li:before {
-
New point release version scheme - 2.11.1.0
+ -
+ 'Jalview Test' installers/apps for easier access to test-release channel builds
+
Build System
-
@@ -120,14 +132,37 @@ li:before {
report
+ Groovy Scripts
+
+ -
+ exportconsensus.groovy prints a FASTA file
+ to stdout containing the consensus sequence for each
+ alignment in a Jalview session
+
+
|
-
- ID margins for CDS and Protein views not equal when split frame is first opened
+ Hidden sequence markers still visible when
+ 'Show hidden markers' option is not ticked
+
+ -
+ Feature Editor dialog can be opened when
+ 'Show Sequence Features' option is not ticked
+
+ -
+ Undo 'Null' operation shown after sort by
+ buttons in Feature Settings dialog are clicked when no
+ features are visible
-
- Sequence position numbers in status bar not correct after editing a sequence's start position
+ ID margins for CDS and Protein views not
+ equal when split frame is first opened
+
+ -
+ Sequence position numbers in status bar not
+ correct after editing a sequence's start position
-
Alignment is misaligned in wrapped mode
@@ -155,34 +190,45 @@ li:before {
IllegalArgumentException in some circumstances
-
- Multiple feature settings dialogs can be opened for a view
+ Multiple feature settings dialogs can be
+ opened for a view
-
- Feature Settings dialog is orphaned if alignment window is closed
+ Feature Settings dialog is orphaned if
+ alignment window is closed
-
Credits missing some authors in Jalview
help documentation for 2.11.0 release
+ -
+ Export of Pfam alignment as Stockholm
+ includes Pfam ID as sequence's accession rather than its
+ Uniprot Accession
+
Java 11 Compatibility issues
-
- OSX - Can't view some search results in PDB/Uniprot search panel
+ OSX - Can't view some search results in
+ PDB/Uniprot search panel
- Installer
+ Installer
- - Jalview should not create file associations for 3D structure files (.pdb, .mmcif. .cif)
+
-
+ Jalview should not create file associations
+ for 3D structure files (.pdb, .mmcif. .cif)
Repository and Source Release
-
- removed obsolete .cvsignore files from repository
+ removed obsolete .cvsignore files from
+ repository
-
- Clover report generation running out of memory
+ Clover report generation running out of
+ memory
-
- New Known Issues
+ New Known Issues
-
OSX - Current working directory not
@@ -195,7 +241,15 @@ li:before {
enabled
-
- Jalview Installation type always reports 'Source' in console output
+ Jalview Installation type always reports
+ 'Source' in console output
+
+ -
+ Test Suite: Certain Functional tests fail on jalview's
+ bamboo server but run fine locally.
+
+ -
+ Filtering features by genomic location (POS) is broken by rounding
|