X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=e02d472b33e5bf0b3e3020e479525d9057bde148;hb=e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8;hp=9f4495167c993bff74eb16a0560a8dd1bef05a22;hpb=75a79cca557db76b4d52b433d77fa6dc773147b0;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 9f44951..e02d472 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -59,7 +59,7 @@ li:before {
2.11.2.0
- 3/03/2022 |
+ 8/03/2022
-
@@ -68,6 +68,10 @@ li:before {
Chimera.
-
+ Upgraded bundled version of Jmol
+ to 14.31.53
+
+ -
Discover 3D structure data for sequences
with Uniprot references via 3D-Beacons
@@ -100,6 +104,22 @@ li:before {
Support for Canonical Uniprot IDs
-
+ Updated Ensembl REST Client compatibility
+ to 15.2 and revised model organism names (rat, xenopus,
+ dmelanogaster now rattus_norvegicus, xenopus_tropicalis,
+ drosophila_melanogaster)
+
+ -
+ Sequence IDs split on '_' as well as other
+ non-alphanumerics when discovering database references with
+ 'Fetch DB Refs'
+
+ -
+ Suppressed harmless exceptions output to
+ Console whilst discovering database references for a
+ sequence
+
+ -
Updated Jalview bindings for Uniprot XML
schema
@@ -119,11 +139,18 @@ li:before {
textbox
-
+ support for HTTP/S access via
+ proxies that require authentication
+
+ -
+ New mechanism for opening URLs with system
+ default browser (works on OSX and Linux as well as Windows)
+
+ -
GPL license info on splash screen and About
text
-
- Jalview Native App
+ Jalview Native App
-
New Jalview Develop app - making it even easier
@@ -138,14 +165,39 @@ li:before {
Console and other window widgets in taskbar and dock rather
than anonymous 'Java' icons
+ -
+ Options to allow user to choose the (Swing)
+ Look and Feel (LaF) used by Jalview
+
+ -
+ Metal LaF used to improved
+ operation on Linux Ubuntu with HiDPI display in Java 11
+ (still known issues with HiDPI screens in java 8 and 11. see
+ JAL-3137)
+
+ -
+ New command line launcher scripts (.sh,
+ .ps1, .bat) usable on macOS, Linux/Unix, Windows and
+ documentation in Help. Installer wizard has option to add
+ this to PATH, or link to it in your PATH.
This
+ is the recommended workaround for known issue about
+ working directory preservation when running native
+ application from command line.
+
+
+ -
+ Getdown launcher inherits HTTP/S proxy
+ configuration from jalview_properties
+
JalviewJS
-
- PDB structures mapped to Uniprot Sequences with
- SIFTS
+ PDB structures mapped to Uniprot Sequences
+ with SIFTS
-
- setprop commandline argument reinstated for JalviewJS only
+ setprop commandline argument reinstated for
+ JalviewJS only
-
Missing message bundle keys are only
@@ -156,7 +208,14 @@ li:before {
Feature type is included in the title of
the Feature Settings' Colour Chooser dialog
-
+ -
+ Build details reported in About window
+
+ -
+ Numerous minor
+ GUI additions and improvements in sync with Java
+ application.
+
Development
-
@@ -185,9 +244,7 @@ li:before {
Improved compatibility of Jalview build
with Java 17 (next LTS target)
-
-
|
@@ -203,7 +260,6 @@ li:before {
-
Annotation file: PROPERTIES apply only to
the first SEQUENCE_GROUP defined
-
-
@@ -242,26 +298,29 @@ li:before {
Can open multiple Preferences panels
-
- Standard out logging broken: messages only
- routing to stderr and appear as a raw template
-
- JalviewJS
-
- -
- Consensus profile may include zero (rounded
- down) percentage values causing a divide by zero
+ Properly configure HTTPS proxy settings
+ from Preferences
-
-
+ Standard out logging broken: messages only
+ routing to stderr and appear as a raw template
-
-
+ Entering web service parameter values in
+ numerical field doesn't update the value of the parameter
+ until return is pressed.
-
-
+ Resolved known issue (from 2.11.1.1)
+ concerning duplicate CDS sequences generated when protein
+ products for certain ENA records are repeatedly shown via
+ Calculate->Show Cross Refs
+ JalviewJS
+
-
-
+ Consensus profile may include zero (rounded
+ down) percentage values causing a divide by zero
-
JalviewJS doesn't honour arguments passed
@@ -286,6 +345,14 @@ li:before {
+ Known Issues
+
+ -
+ Display of RESNUM sequence features are not
+ suppressed when structures associated with a sequence are
+ viewed with an external viewer (Regression from 2.11.1
+ series)
+
|
@@ -529,6 +596,12 @@ li:before {
Improved support for Hi-DPI (4K) screens
when running on Linux (Requires Java 11+)
+