X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=f0516e985d52673126d0463dab27489062b18131;hb=738f79179e4135a7225fc5c36e1ac4118aff0efb;hp=83a9cc332e3db71ab74ea12ce94f47dffeb72234;hpb=36bdfa4e241dbfa7573e04c4d4a0185c7479bf5d;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 83a9cc3..f0516e9 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -58,7 +58,7 @@ li:before {
2.11.1.1
- 13/07/2020 |
+ 11/08/2020
@@ -66,7 +66,57 @@ li:before {
Shift+arrow keys navigate to next gap or
residue in cursor mode
-
+ -
+ Support import of VCF 4.3 by updating
+ HTSJDK from 2.12 to 2.23
+
+ -
+ IntervalStore library updated to v.1.1:
+ optimisations and improvements suggested by Bob Hanson and
+ improved compatibility with JalviewJS
+
+ -
+ Retrieve GZipped stockholm formatted
+ alignments from Pfam and Rfam
+
+ -
+ Recognise GZipped content for URLs and File
+ import (no longer based on .gz extension)
+
+ -
+ Updated Spanish Translation for 2.11.1
+
+ -
+ Migrate EMBL record retrieval to use latest
+ ENA Browser (https://www.ebi.ac.uk/ena/browser/home) and
+ EMBL flat file
+
+ -
+ Improved warning messages, debug logging
+ and fixed Retry action when Jalview encounters errors when
+ saving or making backup files.
+
+ -
+ Enhanced Jalview Java Console:
+
+ - Jalview's logging level can be configured
+ - Copy to Clipboard Buttion
+
+
+ -
+ Improved support for Hi-DPI (4K) screens
+ when running on Linux (Requires Java 11+)
+
+ Launching Jalview
+
+ -
+ Configure Jalview Desktop's look and feel
+ through a system property
+
+ -
+ Improved built-in documentation and command
+ line help for configuring Jalview's memory
+
|
@@ -77,12 +127,77 @@ li:before {
Alt+Left or Right arrow in cursor mode
- doesn't slide selected sequences
+ doesn't slide selected sequences, just sequence under cursor
Peptide-to-CDS tracking broken when
multiple EMBL gene products shown for a single contig
+
+ Errors encountered when processing variants
+ from VCF files yield "Error processing VCF: Format specifier
+ '%s'" on the console
+
+
+ Count of features not shown can be wrong
+ when there are both local and complementary features mapped
+ to the position under the cursor
+
+
+ Sequence ID for reference sequence is
+ clipped when Right align Sequence IDs enabled
+
+
+ Slider with negative range values not
+ rendered correctly in VAqua4 (Since 2.10.4)
+
+
+ Single quotes not displayed correctly in
+ internationalised text for some messages and log output
+
+
+ Find doesn't report matches that span
+ hidden gapped columns
+
+
+ Resolved memory leaks in Tree and PCA
+ panels, Alignment viewport and annotation renderer.
+
+
+ Jalview ignores file format parameter
+ specifying output format when exporting an alignment via the
+ command line
+
+ Developing Jalview
+
+ -
+ Fixed issue with cleaning up old coverage
+ data, causing cloverReport gradle task to fail with an
+ OutOfMemory error.
+
+ New Known defects
+
+ -
+ Co-located features exported and re-imported
+ are ordered differently when shown on alignment and in
+ tooltips. (Also affects v2.11.1.0)
+
+ -
+ Windows 10: For a minority of users, if
+ backups are not enabled, Jalview sometimes fails to
+ overwrite an existing file and raises a warning dialog.
+ Workaround is to try to save the file again, and if that
+ fails, delete the original file and save in place.
+
+ -
+ Drag and drop of alignment file onto
+ alignment window not working correctly when in a HiDPI
+ scaled mode in Linux
+
+ -
+ Stale build data in jalview standalone jar
+ builds (only affects 2.11.1.1 branch)
+
|