X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Freleases.html;h=fe89048cd7f933581f457cd5c8dc93241e13a5b3;hb=9dba42effb39584c255d94b8154c6f4c0c62df68;hp=4695e7fcdc9d22d371388d5cf5d6cc0e61c7335b;hpb=23a6193c05af862c01bbb11d84c88234af8348bc;p=jalview.git
diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 4695e7f..fe89048 100755
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -57,14 +57,66 @@ li:before {
2.11.1.1
+ 13/07/2020 |
+
+
+
+ -
+ Shift+arrow keys navigate to next gap or
+ residue in cursor mode
+
+ -
+ Support import of VCF 4.3 by updating
+ HTSJDK from 2.12 to 2.23
+
+ -
+ IntervalStore library updated to v.1.1:
+ optimisations and improvements suggested by Bob Hanson and
+ improved compatibility with JalviewJS
+
+
+
+ |
+
+
+ -
+ Escape does not clear highlights on the
+ alignment (Since Jalview 2.10.3)
+
+ -
+ Alt+Left or Right arrow in cursor mode
+ doesn't slide selected sequences
+
+ -
+ Peptide-to-CDS tracking broken when
+ multiple EMBL gene products shown for a single contig
+
+ -
+ Errors encountered when processing variants
+ from VCF files yield "Error processing VCF: Format specifier
+ '%s'" on the console
+
+ -
+ Count of features not shown can be wrong
+ when there are both local and complementary features mapped
+ to the position under the cursor
+
+
+ |
+
+
+ 2.11.1.0
- 16/04/2020 |
+ 22/04/2020
-
- Map 'virtual'
- codon features shown on protein (or vice versa) for display
- in alignments, on structure views and for export.
+ Map
+ 'virtual' codon features shown on protein (or vice versa)
+ for display in alignments, on structure views (including
+ transfer to UCSF chimera), in feature reports and for
+ export.
-
Feature attributes from VCF files can be
@@ -98,6 +150,9 @@ li:before {
Warn if Sort by Score or Density attempted
with no feature types visible
+ -
+ Improved support for filtering feature attributes with large integer values
+
Jalview Installer
-
@@ -139,6 +194,11 @@ li:before {
to stdout containing the consensus sequence for each
alignment in a Jalview session
+ -
+ ComputePeptideVariants.groovy to translate
+ genomic sequence_variant annotation from CDS as
+ missense_variant or synonymous_variant on protein products.
+
|
@@ -148,6 +208,11 @@ li:before {
'Show hidden markers' option is not ticked
+ Hidden sequence markers not shown in EPS and
+ PNG output when 'Automatically set ID width' is set in
+ jalview preferences or properties file
+
+
Feature Editor dialog can be opened when
'Show Sequence Features' option is not ticked
@@ -248,9 +313,6 @@ li:before {
Test Suite: Certain Functional tests fail on jalview's
bamboo server but run fine locally.
-
- Filtering features by genomic location (POS) is broken by rounding
-
|