+ The JAva Bioinformatics
+ Analysis Web Services
+ system (JABAWS)
Jalview
+ includes a client for interacting with programmatic (SOAP) web
+ services provided by the JABAWS
+ system, developed at the University of Dundee by Peter
+ Troshin, Sasha Sherstnev, Dan Barton, Fabio Madeira-Marquez, Jim Procter and Geoff Barton.
+ This is an open source system that provides a framework for wrapping command line bioinformatics
+ analysis programs that enables them to be executed locally or on a
+ cluster using data and analysis parameters provided by a program
+ linked with the JABA engine directly or accessing it remotely via
+ its web services interface.
+
+ The list of JABAWS servers known to the Jalview desktop is shown in + the Web Services Preferences + Panel, and detailed information about a particular service is + available from the help text and web pages accessible from its job parameters dialog box. +
+
+ Obtaining JABAWS
One of the aims of JABAWS
+ is to enable you to easily perform computationally intensive
+ bioinformatics analysis tasks using your own computational
+ facilities. It can be installed on a workstation to provide
+ stand-alone execution of analysis programs, or as a job submission
+ engine - enabling larger numbers of jobs to be handled. If you would
+ like to download and install JABAWS for your own use, please go to http://www.compbio.dundee.ac.uk/jabaws
+ for more information.
+
+ Configuring your own JABAWS services for use by
+ Jalview
Once you have downloaded and installed JABAWS,
+ and verified it is working, all that is needed is to add the URL for
+ your JABAWS server(s) to the list in the Web Services Preferences
+ Panel. After adding your service and saving your preferences or
+ hitting the 'refresh web services' button, you should be able to
+ submit jobs to the server via the alignment window's web services
+ menu. Your JABAWS servers list is stored in your Jalview
+ preferences, so you will only have to configure Jalview once for
+ each new server.
+
+ JABAWS Client updated to version 2.2 in Jalview 2.10.2 +
++ Option for adding JABAWS servers which fails validation was + introduced from version 2.8.2 +
++ Support for accessing JABAWS servers was introduced in + Jalview 2.6. +
+ +