X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;fp=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=bee83800ed3b864e674571b340fc0957b949793e;hb=6875edc608179e9710388439099542296f263c15;hp=a448aaa174103c5bab74fefb0f557ba61f3165e5;hpb=f04ad4f464d283551ae68964eb2516cbea9225c6;p=jalview.git
diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html
index a448aaa..bee8380 100755
--- a/help/help/html/whatsNew.html
+++ b/help/help/html/whatsNew.html
@@ -26,46 +26,22 @@
Jalview 2.11.1.3
- Jalview 2.11.1.3 is the third patch release, fixing a bug
- introduced in last weeks Jalview 2.11.1.1 release affecting display
- of Jalview's example project for some users. Together, these
- releases include fixes for a number of critical bugs, and also contains a
- handful of new features suggested by the Jalview community.
+ Jalview 2.11.1.3 is the third patch release in the 2.11.1
+ series. Critical bugs resolved in this release include:
- - Shift+arrow keys navigate to next gap or residue in cursor
- mode (enable with F2)
- - Support import of VCF 4.3 by updating HTSJDK from 2.12 to
- 2.23
- - Improved recognition of GZipped files from local disk or
- retrieved via the web
- - EMBL and EMBL CDS database records retrieved from the
- European Nucleotide Archive's Data API as 'EMBL Flatfile' records
- - Improved Java Console and
- logging to help track down problems
-
- - Improved support for Hi-DPI (4K) screens when running on
- Linux (Requires Java 11+)
-
- Critical bug fixes include
-
- - Jalview runs correctly when launched with Turkish language
- settings
- - Peptide-to-CDS tracking broken when multiple EMBL gene
- products shown for a single contig (such as viral genomes)
- - Errors encountered when processing variants from VCF files
- yield "Error processing VCF: Format specifier '%s'" on the console
- - Count of features not shown can be wrong when there are
- both DNA and Protein features mapped to the position under
- the cursor
- - Sequence ID for reference sequence is clipped when Right
- align Sequence IDs enabled
- - Find doesn't report matches that span hidden gapped columns
- - Jalview ignores file format parameter specifying output
- format when exporting an alignment via the command line
+ - Find doesn't highlight all motif matches for a sequence.
+ - Mouse over highlighting, CDS reconstruction and problems
+ with virtual feature popups when working with linked CDS/Protein
+ alignments.
+ - Result of aligning protein sequences linked to CDS results
+ in incorrect CDS alignment.
+ - Jalview installer doesn't correctly install Jalview on
+ paths containing spaces.
- For the full release notes, see the
- Jalview 2.11.1.1 release notes.
+ For the full release notes, see the Jalview 2.11.1.3
+ release notes.
Known Issues
@@ -80,7 +56,7 @@
v2.11.1.0)
Drag and drop of alignment file onto alignment window when
in a HiDPI scaled mode in Linux only works for the top left
- quadrant of the alignment window
+ quadrant of the alignment window.