X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=40b51d1ecfad482c9d87732dbd9f53f5cd160f1b;hb=69b8ecf79850cfdbc90584e485e23ae168450e1e;hp=a448aaa174103c5bab74fefb0f557ba61f3165e5;hpb=a566d9d95be9aafbd3dea5ae2fc2b99718d546aa;p=jalview.git diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html index a448aaa..40b51d1 100755 --- a/help/help/html/whatsNew.html +++ b/help/help/html/whatsNew.html @@ -24,63 +24,15 @@

- Jalview 2.11.1.3 + Jalview 2.11.1.7

Jalview 2.11.1.3 is the third patch release, fixing a bug - introduced in last weeks Jalview 2.11.1.1 release affecting display - of Jalview's example project for some users. Together, these - releases include fixes for a number of critical bugs, and also contains a - handful of new features suggested by the Jalview community.

Shift+arrow keys navigate to next gap or residue in cursor - mode (enable with F2)
Support import of VCF 4.3 by updating HTSJDK from 2.12 to - 2.23
Improved recognition of GZipped files from local disk or - retrieved via the web
EMBL and EMBL CDS database records retrieved from the - European Nucleotide Archive's Data API as 'EMBL Flatfile' records
Improved Java Console and - logging to help track down problems -
Improved support for Hi-DPI (4K) screens when running on - Linux (Requires Java 11+)

Critical bug fixes include

Jalview runs correctly when launched with Turkish language - settings
Peptide-to-CDS tracking broken when multiple EMBL gene - products shown for a single contig (such as viral genomes)
Errors encountered when processing variants from VCF files - yield "Error processing VCF: Format specifier '%s'" on the console
Count of features not shown can be wrong when there are - both DNA and Protein features mapped to the position under - the cursor
Sequence ID for reference sequence is clipped when Right - align Sequence IDs enabled
Find doesn't report matches that span hidden gapped columns
Jalview ignores file format parameter specifying output - format when exporting an alignment via the command line

Jalview 2.11.1.7 is a patch release that addresses connectivity + issues for third party services over HTTPS, and problems experienced + by Windows users when saving files from Jalview.

- For the full release notes, see the - Jalview 2.11.1.1 release notes. + For the full release notes, see the Jalview 2.11.1.7 + release notes.

- Known Issues -

We've had reports from a small number of windows 10 users - who see a warning dialog pop up when Jalview tries to save a new - version of an existing file. If you are affected by this bug and - this latest version of Jalview doesn't fix it, please let us know!
Co-located features exported and re-imported are ordered - differently when shown on alignment and in tooltips. (Also affects - v2.11.1.0)
Drag and drop of alignment file onto alignment window when - in a HiDPI scaled mode in Linux only works for the top left - quadrant of the alignment window