- Welcome to Jalview Version $$Version-Rel$$ !!
Please take a
- look at the release
- notes for this build.
+ Welcome to Jalview Version $$Version-Rel$$ !!
- Jalview 2.11.1.4 -
-Jalview 2.11.1.4 is the fourth patch release in the 2.11.1 - series. One critical bug was fixed in this release - when Jalview - would occasionally hang when viewing structures in Jmol. This release - also introduces a number of new configuration options for disabling - web service connections used by the Jalview Debian package. + This Jalview release provides support for two popular 3D structure + visualisation tools, new features for discovery of 3D structures, + improved platform integration and a new command line tool allowing + Jalview to be more easily called from scripts.
+
- For the full release notes, see the Jalview 2.11.1.4
- release notes.
+ View predicted protein structures via 3D-Beacons
+ Jalview 2.11.2's Structure
+ Chooser includes a client for the 3D-Beacons Network. Launched in
+ 2021, the 3D-Beacons network (www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/)
+ provides a central point for the retrieval of predicted and observed
+ 3D structures for sequences in Uniprot, including homology models
+ from Swiss-model and deep learning based predictions from the EBI's
+ Alphafold database (Orengo et al. 2020, doi:10.12688/f1000research.20559.1).
- Known Issues
+ Support for viewing structures with ChimeraX and
+ Pymol
Jalview's 3D structure viewer system has been
+ re-architected to allow easier integration of external structure
+ viewers, and takes advantage of the strucViz2 Chimera communications
+ library developed by Scooter Morris (doi:10.1093/bioinformatics/btm329).
+ The Structures
+ Preferences tab provides new options allowing ChimeraX and
+ Pymol to be used for visualising external 3D structures. Views
+ from all structure viewers are saved in Jalview Projects, allowing
+ them to be shared with others using Jalview 2.11.2 or later,
+ providing they have the same viewer installed and configured to be
+ used with Jalview.
Jalview
+ 2.11.2 has been tested with Pymol 2.5.0 (community) and 2.5.2
+ (incentive). For ChimeraX, we recommend using v1.3 or later.
New known issues in this release affect recovery of CDS/Protein - relationships from project files, and interactive selection of - protein sequences from a tree built on linked nucleotide sequences. - We will provide patches for these issues as soon as possible.
+Other highlights include:
++ For the full release notes, see the Jalview 2.11.2.0 + release notes. +
+
+ Known Issues
The following known issues will
+ be addressed in a minor patch release.
+
+