X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=97b1b2dabe9fe2c9d9b4f92f44dc8cee495ffbb7;hb=2c0496537b3ea1fb76dca30c7c3b5d87c0333260;hp=3538ff4b1738f95e0516332b803c139306ed7206;hpb=44d68d55d9c85bf7b28853feeebc4b901c4a8392;p=jalview.git diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html index 3538ff4..97b1b2d 100755 --- a/help/help/html/whatsNew.html +++ b/help/help/html/whatsNew.html @@ -24,48 +24,18 @@

- Jalview 2.11 - major and minor new features + Jalview 2.11.1.5

Jalview 2.11 introduces support for loading VCF files, and new - filters and shading models for sequence features. Under the hood, - we've addressed many bugs, and also made some important changes in - the way the Jalview desktop is installed and launched.

VCF Support. Proteins and genomic contigs with - chromosomal location annotation (such as protein coding genes - retrieved from Ensembl) can be annotated with variants imported - from a local VCF file.
The Jalview Launcher and Update System
- Jalview's new installation model means you'll only need to - download and install Jalview once. After installation, Jalview - will automatically keep itself up to date. The launcher also sets - Jalview's memory automatically, so you'll never again have to - manually configure Java's memory settings.
We are grateful to - Install4J who provided us with a free license for their - installation system, and Jalview's over the air update system is - via Getdown.

Jalview 2.11.1.5 is a critical patch release that updates one + of the open source components, log4j, that Jalview relies on. The + update addresses the widely reported log4shell security + vunerability. This release also addresses a bug in the occupancy + calculation that occurs when working with alignments of more than + 32,000 sequences.

- The full list of bugs fixed in this release can be found in the 2.11 Release Notes. + For the full release notes, see the Jalview 2.11.1.5 + release notes.

- Jalview and Java 11, 13, and onwards -

Java 11 provides improved performance and better OS - integration, so we now recommend users select our Java 11 Jalview - distribution rather than the legacy Java 8 build.

- Known Issues - update for 211 -

OSX: The 'Open File' dialog for Jalview's Groovy Console - appears with the title 'Save As', and attempting to select a file - to load yields a FileNotFound exception.
The workaround is to first - clear the 'Untitled' filename before selecting the file you wish - to load. -
OSX: Links don't open when clicked on or via the Sequence - or Alignment window popup menu.
OSX (Webstart): JalviewÂ only displays old news feed items