X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=97b1b2dabe9fe2c9d9b4f92f44dc8cee495ffbb7;hb=2c0496537b3ea1fb76dca30c7c3b5d87c0333260;hp=a62e71dbfc2c6589d8a0b249d20b2be80101c5d8;hpb=0df0212d23b9c373d042c56213c06bde16b62b1c;p=jalview.git
diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html
index a62e71d..97b1b2d 100755
--- a/help/help/html/whatsNew.html
+++ b/help/help/html/whatsNew.html
@@ -24,61 +24,18 @@
- Jalview 2.11.1.1
+ Jalview 2.11.1.5
- Jalview 2.11.1.1 is the first patch release for Jalview version
- 2.11.1. In addition to fixes for some critical it also contains a
- handful of new features suggested by the Jalview community.
-
- - Shift+arrow keys navigate to next gap or residue in cursor
- mode (enable with F2)
- - Support import of VCF 4.3 by updating HTSJDK from 2.12 to
- 2.23
- - Improved recognition of GZipped files from local disk or
- retrieved via the web
- - EMBL and EMBL CDS database records retrieved from the
- European Nucleotide Archive's Data API as 'EMBL Flatfile' records
- - Improved Java Console and
- logging to help track down problems
-
- - Improved support for Hi-DPI (4K) screens when running on
- Linux (Requires Java 11+)
-
- Critical bug fixes include
-
- - Jalview runs correctly when launched with Turkish language
- settings
- - Peptide-to-CDS tracking broken when multiple EMBL gene
- products shown for a single contig (such as viral genomes)
- - Errors encountered when processing variants from VCF files
- yield "Error processing VCF: Format specifier '%s'" on the console
- - Count of features not shown can be wrong when there are
- both DNA and Protein features mapped to the position under
- the cursor
- - Sequence ID for reference sequence is clipped when Right
- align Sequence IDs enabled
- - Find doesn't report matches that span hidden gapped columns
- - Jalview ignores file format parameter specifying output
- format when exporting an alignment via the command line
-
+ Jalview 2.11.1.5 is a critical patch release that updates one
+ of the open source components, log4j, that Jalview relies on. The
+ update addresses the widely reported log4shell security
+ vunerability. This release also addresses a bug in the occupancy
+ calculation that occurs when working with alignments of more than
+ 32,000 sequences.
- For the full release notes, see the
- Jalview 2.11.1.1 release notes.
+ For the full release notes, see the Jalview 2.11.1.5
+ release notes.
-
- Known Issues
-
-
- - We've had reports from a small number of windows 10 users
- who see a warning dialog pop up when Jalview tries to save a new
- version of an existing file. If you are affected by this bug and
- this latest version of Jalview doesn't fix it, please let us know!
- - Co-located features exported and re-imported are ordered
- differently when shown on alignment and in tooltips. (Also affects
- v2.11.1.0)
- - Drag and drop of alignment file onto alignment window when
- in a HiDPI scaled mode in Linux only works for the top left
- quadrant of the alignment window
-