X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=97b1b2dabe9fe2c9d9b4f92f44dc8cee495ffbb7;hb=2c0496537b3ea1fb76dca30c7c3b5d87c0333260;hp=aaef948117dca8f89c44e32ec52d549612d0cd6f;hpb=e6322a597de6a9d28819a643a598f5e7d60c0242;p=jalview.git
diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html
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@@ -24,46 +24,18 @@
- Jalview 2.11 - major and minor new features
+ Jalview 2.11.1.5
- Jalview 2.11 introduces support for loading VCF files, and new
- filters and shading models for sequence features. Under the hood,
- we've addressed many bugs, and also made some important changes in
- the way the Jalview desktop is installed and launched.
-
- - VCF Support. Proteins and genomic contigs with
- chromosomal location annotation (such as protein coding genes
- retrieved from Ensembl) can be annotated with variants imported from a local VCF file.
- - The Jalview Launcher and Update System
- Jalview's new installation model means you'll only need to
- download and install Jalview once. After installation, Jalview
- will automatically keep itself up to date. The launcher also sets
- Jalview's memory automatically, so you'll never again have to
- manually configure Java's memory settings.
We are grateful
- to Install4J who provided us with a free license for their
- installation system, and Jalview's over the air update system is
- based on Three Rings' Getdown system.
- - Backup files
Jalview will automatically
- create backups when overwriting existing files, and - unlike with
- earlier versions, should Jalview crash during a save, the original
- file will be unaffected.
- - PCA plots stored in Jalview Projects
The PCA
- viewer has also been enhanced and the user interface revised.
- -
-
-
+ Jalview 2.11.1.5 is a critical patch release that updates one
+ of the open source components, log4j, that Jalview relies on. The
+ update addresses the widely reported log4shell security
+ vunerability. This release also addresses a bug in the occupancy
+ calculation that occurs when working with alignments of more than
+ 32,000 sequences.
- The full list of bugs fixed in this release can be found in the 2.11 Release Notes.
+ For the full release notes, see the Jalview 2.11.1.5
+ release notes.
-
- Jalview and Java 11, 13, and onwards
-
- The Jalview application comes bundled with its own independent
- Java installation which will be updated automatically from
- www.jalview.org. Version 2.11.0 includes an AdoptOpenJDK Java 1.8
- runtime, but installations will be migrated to the latest Java
- release once remaining issues have been addressed.