X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=b94b9bf3872eb8182e06c968666800fabc483162;hb=e4a1d321196af18049444db25ce0e2b142cdd984;hp=3538ff4b1738f95e0516332b803c139306ed7206;hpb=44d68d55d9c85bf7b28853feeebc4b901c4a8392;p=jalview.git diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html index 3538ff4..b94b9bf 100755 --- a/help/help/html/whatsNew.html +++ b/help/help/html/whatsNew.html @@ -24,48 +24,31 @@

- Jalview 2.11 - major and minor new features + Welcome to Jalview Version $$Version-Rel$$ !!
Please take a + look at the release + notes for this build. +

+ Jalview 2.11.1.4 +

Jalview 2.11.1.4 is the fourth patch release in the 2.11.1 + series. One critical bug was fixed in this release - when Jalview + would occasionally hang when viewing structures in Jmol. This release + also introduces a number of new configuration options for disabling + web service connections used by the Jalview Debian package.

Jalview 2.11 introduces support for loading VCF files, and new - filters and shading models for sequence features. Under the hood, - we've addressed many bugs, and also made some important changes in - the way the Jalview desktop is installed and launched.

VCF Support. Proteins and genomic contigs with - chromosomal location annotation (such as protein coding genes - retrieved from Ensembl) can be annotated with variants imported - from a local VCF file.
The Jalview Launcher and Update System
- Jalview's new installation model means you'll only need to - download and install Jalview once. After installation, Jalview - will automatically keep itself up to date. The launcher also sets - Jalview's memory automatically, so you'll never again have to - manually configure Java's memory settings.
We are grateful to - Install4J who provided us with a free license for their - installation system, and Jalview's over the air update system is - via Getdown.

- The full list of bugs fixed in this release can be found in the 2.11 Release Notes. + For the full release notes, see the Jalview 2.11.1.4 + release notes.

- Jalview and Java 11, 13, and onwards + Known Issues

Java 11 provides improved performance and better OS - integration, so we now recommend users select our Java 11 Jalview - distribution rather than the legacy Java 8 build.

- Known Issues - update for 211 -

OSX: The 'Open File' dialog for Jalview's Groovy Console - appears with the title 'Save As', and attempting to select a file - to load yields a FileNotFound exception.
The workaround is to first - clear the 'Untitled' filename before selecting the file you wish - to load. -
OSX: Links don't open when clicked on or via the Sequence - or Alignment window popup menu.
OSX (Webstart): JalviewÂ only displays old news feed items

New known issues in this release affect recovery of CDS/Protein + relationships from project files, and interactive selection of + protein sequences from a tree built on linked nucleotide sequences. + We will provide patches for these issues as soon as possible.