X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=b94b9bf3872eb8182e06c968666800fabc483162;hb=e4a1d321196af18049444db25ce0e2b142cdd984;hp=aaef948117dca8f89c44e32ec52d549612d0cd6f;hpb=e6322a597de6a9d28819a643a598f5e7d60c0242;p=jalview.git diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html index aaef948..b94b9bf 100755 --- a/help/help/html/whatsNew.html +++ b/help/help/html/whatsNew.html @@ -24,46 +24,31 @@

- Jalview 2.11 - major and minor new features + Welcome to Jalview Version $$Version-Rel$$ !!
Please take a + look at the release + notes for this build.

Jalview 2.11 introduces support for loading VCF files, and new - filters and shading models for sequence features. Under the hood, - we've addressed many bugs, and also made some important changes in - the way the Jalview desktop is installed and launched.

VCF Support. Proteins and genomic contigs with - chromosomal location annotation (such as protein coding genes - retrieved from Ensembl) can be annotated with variants imported from a local VCF file.
The Jalview Launcher and Update System
- Jalview's new installation model means you'll only need to - download and install Jalview once. After installation, Jalview - will automatically keep itself up to date. The launcher also sets - Jalview's memory automatically, so you'll never again have to - manually configure Java's memory settings.
We are grateful - to Install4J who provided us with a free license for their - installation system, and Jalview's over the air update system is - based on Three Rings' Getdown system.
Backup files
Jalview will automatically - create backups when overwriting existing files, and - unlike with - earlier versions, should Jalview crash during a save, the original - file will be unaffected.
PCA plots stored in Jalview Projects
The PCA - viewer has also been enhanced and the user interface revised.
-

- The full list of bugs fixed in this release can be found in the 2.11 Release Notes. + Jalview 2.11.1.4 +

Jalview 2.11.1.4 is the fourth patch release in the 2.11.1 + series. One critical bug was fixed in this release - when Jalview + would occasionally hang when viewing structures in Jmol. This release + also introduces a number of new configuration options for disabling + web service connections used by the Jalview Debian package.

- Jalview and Java 11, 13, and onwards + For the full release notes, see the Jalview 2.11.1.4 + release notes.

The Jalview application comes bundled with its own independent - Java installation which will be updated automatically from - www.jalview.org. Version 2.11.0 includes an AdoptOpenJDK Java 1.8 - runtime, but installations will be migrated to the latest Java - release once remaining issues have been addressed.

+ Known Issues +

New known issues in this release affect recovery of CDS/Protein + relationships from project files, and interactive selection of + protein sequences from a tree built on linked nucleotide sequences. + We will provide patches for these issues as soon as possible.