X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FwhatsNew.html;h=e7db2d9cfb46fac9ca6867ec183e226886a83046;hb=56955fc6a526b35bff79df13613bc88390824fec;hp=00f94661de6105662b8c2458ffd24a3979c1d67f;hpb=8b0ad7a1cd2800549ccc31f90e8450445eb654c1;p=jalview.git diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html index 00f9466..e7db2d9 100755 --- a/help/help/html/whatsNew.html +++ b/help/help/html/whatsNew.html @@ -24,52 +24,71 @@
- Jalview 2.11.1.0
+ Welcome to Jalview Version $$Version-Rel$$ !!
This is a patch release for the Jalview 2.11.2 series.
+This release series provides support for two popular 3D + structure visualisation tools, new features for discovery of 3D + structures, improved platform integration and a new command line + tool allowing Jalview to be more easily called from scripts.
+
- Jalview 2.11.1.0 is the first minor release for the 2.11 series.
- Along with a number of critical bug fixes and improvements it brings
- new functionality for mapping sequence features between CDS and
- Protein alignments. It is also the first release made under a new four
- number versioning scheme, which will allow us to keep track of
- patches and bug fixes.
+ View predicted protein structures via 3D-Beacons
+ Jalview 2.11.2's Structure
+ Chooser includes a client for the 3D-Beacons Network. Launched in
+ 2021, the 3D-Beacons network (www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/)
+ provides a central point for the retrieval of predicted and observed
+ 3D structures for sequences in Uniprot, including homology models
+ from Swiss-model and deep learning based predictions from the EBI's
+ Alphafold database (Orengo et al. 2020, doi:10.12688/f1000research.20559.1).
+ Support for viewing structures with ChimeraX and
+ Pymol
Jalview's 3D structure viewer system has been
+ re-architected to allow easier integration of external structure
+ viewers, and takes advantage of the strucViz2 Chimera communications
+ library developed by Scooter Morris (doi:10.1093/bioinformatics/btm329).
+ The Structures
+ Preferences tab provides new options allowing ChimeraX and
+ Pymol to be used for visualising external 3D structures. Views
+ from all structure viewers are saved in Jalview Projects, allowing
+ them to be shared with others using Jalview 2.11.2 or later,
+ providing they have the same viewer installed and configured to be
+ used with Jalview.
Jalview
+ 2.11.2 has been tested with Pymol 2.5.0 (community) and 2.5.2
+ (incentive). For ChimeraX, we recommend using v1.3 or later.
+
Other highlights include:
- See the 2.11.1.0 - release notes for full details of bugs fixed and new known issues. -
+ For the full details, see the Jalview 2.11.2.1 + release notes. +
- JalviewJS News
With the release of Jalview 2.11.1.0,
- the team are now focused on bringing JalviewJS to full production.
- To follow our progress take a look at http://www.jalview.org/jalview-js/
- and follow updates on our new JalviewJS
- Releases github repository.
-