X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp.jhm;h=056a813ff0a9ee3fa88c25f4afc4e672608fb871;hb=1698842ec6755d1995dae7c1a590efbfc8f6e4d5;hp=2e10dbffb8051feceaa9fcacdc56ce239978e288;hpb=85fb1c79fd82d7eada801624f745635632be8362;p=jalview.git

diff --git a/help/help.jhm b/help/help.jhm
index 2e10dbf..056a813 100755
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -7,6 +7,7 @@
    <mapID target="release" url="html/releases.html"/>
    <mapID target="alannotation" url="html/features/annotation.html"/>
    <mapID target="keys" url="html/keys.html"/>
+   <mapID target="newkeys" url="html/features/newkeystrokes.html"/>
    <mapID target="cursor" url="html/features/cursorMode.html"/>
    <mapID target="search" url="html/features/search.html"/>   
    <mapID target="webservice" url="html/webServices/index.html"/>
@@ -18,9 +19,12 @@
    <mapID target="seqfetch" url="html/features/seqfetch.html"/>
    <mapID target="seqfeatures" url="html/features/seqfeatures.html"/>
    <mapID target="seqfeatedit" url="html/features/editingFeatures.html"/>
+   <mapID target="seqfeatcreat" url="html/features/creatinFeatures.html"/>
    <mapID target="seqfeatures.settings" url="html/features/featuresettings.html"/>
    <mapID target="viewingpdbs" url="html/features/viewingpdbs.html"/>
    <mapID target="preferences" url="html/features/preferences.html"/>     
+   <mapID target="commandline" url="html/features/commandline.html"/>
+   <mapID target="clarguments" url="html/features/clarguments.html"/>
    <mapID target="io" url="html/io/index.html"/>
    <mapID target="io.modellerpir" url="html/io/modellerpir.html"/>
    <mapID target="export" url="html/io/export.html"/>
@@ -32,7 +36,6 @@
    <mapID target="edit" url="html/editing/index.html"/>
    <mapID target="jalarchive" url="html/features/jalarchive.html"/>
    <mapID target="multipleviews" url="html/features/multipleViews.html"/>
-   <mapID target="reloadsave" url="html/features/reloadSave.html"/>
    <mapID target="trees" url="html/calculations/tree.html"/>
    <mapID target="sorting" url="html/calculations/sorting.html"/>
    <mapID target="pca" url="html/calculations/pca.html"/>
@@ -40,7 +43,8 @@
    <mapID target="redundancy" url="html/calculations/redundancy.html"/>
    <mapID target="hiddenRegions" url="html/features/hiddenRegions.html"/>
    <mapID target="recoverInputdata" url="html/calculations/recoverInputdata.html"/>
-   <mapID target="colours" url="html/colourSchemes/index.html" />
+   <mapID target="colours" url="html/colourSchemes/index.html"/>
+   <mapID target="backdeptextcol" url="html/colourSchemes/textcolour.html"/>
    <mapID target="colours.clustal" url="html/colourSchemes/clustal.html"/>
    <mapID target="colours.zappo" url="html/colourSchemes/zappo.html" />
    <mapID target="colours.taylor" url="html/colourSchemes/taylor.html" />
@@ -66,7 +70,9 @@
    <mapID target="alMenu" url="html/menus/alignmentMenu.html"/>
    <mapID target="alwFile" url="html/menus/alwfile.html"/>
    <mapID target="alwEdit" url="html/menus/alwedit.html"/>
+   <mapID target="alwSelect" url="html/menus/alwselect.html"/>
    <mapID target="alwView" url="html/menus/alwview.html"/>
+   <mapID target="alwFormat" url="html/menus/alwformat.html"/>
    <mapID target="alwColour" url="html/menus/alwcolour.html"/>
    <mapID target="alwCalc" url="html/menus/alwcalculate.html"/>