X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp.jhm;h=0c39a52a7509b1c3281a588819293160559ddef3;hb=HEAD;hp=5324b0b846da4613f3e1fd14dd1d5546058a5482;hpb=effd8d76f34bc7fd4e069603d80565b7ea9d3ff0;p=jalview.git

diff --git a/help/help.jhm b/help/help.jhm
deleted file mode 100755
index 5324b0b..0000000
--- a/help/help.jhm
+++ /dev/null
@@ -1,61 +0,0 @@
-<?xml version="1.0" encoding="ISO-8859-1" ?>
-   <!DOCTYPE map PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp Map Version 1.0//EN" "http://java.sun.com/products/javahelp/map_1_0.dtd">
-<map version="1.0">
-   <mapID target="home" url="html/index.html" />
-   
-   <mapID target="new" url="html/whatsNew.html"/>
-   <mapID target="search" url="html/features/search.html"/>
-   <mapID target="wrap" url="html/features/wrap.html"/>
-   <mapID target="overview" url="html/features/overview.html"/>
-   <mapID target="seqfeatures" url="html/features/seqfeatures.html"/>
-   <mapID target="alannotation" url="html/features/annotation.html"/>
-   
-   <mapID target="webservice" url="html/webServices/index.html"/>
-   <mapID target="clustal" url="html/webServices/clustalw.html"/>
-   <mapID target="muscle" url="html/webServices/muscle.html"/>
-   <mapID target="jnet" url="html/webServices/jnet.html"/>
-   
-   <mapID target="io" url="html/io/index.html"/>
-   <mapID target="export" url="html/io/export.html"/>
-   <mapID target="alformats" url="html/io/fileformats.html"/>
-   <mapID target="edit" url="html/editing/index.html"/>
-   <mapID target="jalarchive" url="html/features/jalarchive.html"/>
-   <mapID target="calculations" url="html/calculations/index.html"/>
-   <mapID target="trees" url="html/calculations/tree.html"/>
-   <mapID target="sorting" url="html/calculations/sorting.html"/>
-   <mapID target="pca" url="html/calculations/pca.html"/>
-   <mapID target="pairwise" url="html/calculations/pairwise.html"/>
-   <mapID target="redundancy" url="html/calculations/redundancy.html"/>
-   
-   <mapID target="colours" url="html/colourSchemes/index.html" />
-   <mapID target="colours.clustal" url="html/colourSchemes/clustal.html"/>
-   <mapID target="colours.zappo" url="html/colourSchemes/zappo.html" />
-   <mapID target="colours.taylor" url="html/colourSchemes/taylor.html" />
-   <mapID target="colours.hydro" url="html/colourSchemes/hydrophobic.html" />
-   <mapID target="colours.helix" url="html/colourSchemes/helix.html" />
-   <mapID target="colours.strand" url="html/colourSchemes/strand.html" />
-   <mapID target="colours.turn" url="html/colourSchemes/turn.html" />
-   <mapID target="colours.buried" url="html/colourSchemes/buried.html" />
-   <mapID target="colours.nucleotide" url="html/colourSchemes/nucleotide.html" />
-   <mapID target="colours.blosum" url="html/colourSchemes/blosum.html" />
-   <mapID target="colours.pid" url="html/colourSchemes/pid.html" />
-   <mapID target="colours.user" url="html/colourSchemes/user.html"/>
-   <mapID target="colours.abovepid" url="html/colourSchemes/abovePID.html"/>
-   <mapID target="colours.conservation" url="html/colourSchemes/conservation.html"/>
-   
-   <mapID target="menus" url="html/menus/index.html"/>
-   <mapID target="desktopMenu" url="html/menus/desktopMenu.html"/>
-   <mapID target="alMenu" url="html/menus/alignmentMenu.html"/>
-   <mapID target="alwFile" url="html/menus/alwfile.html"/>
-   <mapID target="alwEdit" url="html/menus/alwedit.html"/>
-   <mapID target="alwColour" url="html/menus/alwcolour.html"/>
-   <mapID target="alwCalc" url="html/menus/alwcalculate.html"/>
-
-   <mapID target="popMenu" url="html/menus/popupMenu.html"/>
-   <mapID target="annotMenus" url="html/menus/alwannotations.html"/>
-   
-   
-   <mapID target="aminoAcids" url="html/misc/aminoAcids.html" />
-   <mapID target="geneticCode" url="html/misc/geneticCode.html" />
-   
-</map>