X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp.jhm;h=151f5e3a26acb61642eb3a0cc634249aeb6f5e9b;hb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;hp=fe465ec0bebdf8604a4059f68e0d6e12ece89f99;hpb=354963d0c9d69f28fa5aa642c1f13627676ff4ae;p=jalview.git

diff --git a/help/help.jhm b/help/help.jhm
index fe465ec..151f5e3 100755
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="ISO-8859-1" ?>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -22,7 +22,7 @@
    <mapID target="home" url="html/index.html" />
    
    <mapID target="new" url="html/whatsNew.html"/>
-   <mapID target="release" url="html/releases.html"/>
+   <mapID target="release" url="html/releases.html#Jalview.2.9"/>
    <mapID target="alannotation" url="html/features/annotation.html"/>
    <mapID target="keys" url="html/keys.html"/>
    <mapID target="newkeys" url="html/features/newkeystrokes.html"/>
@@ -81,6 +81,7 @@
    <mapID target="pca" url="html/calculations/pca.html"/>
    <mapID target="pairwise" url="html/calculations/pairwise.html"/>
    <mapID target="redundancy" url="html/calculations/redundancy.html"/>
+   <mapID target="referenceseq" url="html/calculations/referenceseq.html"/>
    <mapID target="hiddenRegions" url="html/features/hiddenRegions.html"/>
    <mapID target="recoverInputdata" url="html/calculations/recoverInputdata.html"/>
    <mapID target="colours" url="html/colourSchemes/index.html"/>
@@ -141,6 +142,7 @@
    <mapID target="pdbfetcher" url="html/features/pdbsequencefetcher.html" />
    <mapID target="pdbchooser" url="html/features/structurechooser.html" />
    <mapID target="selectcolbyannot" url="html/features/columnFilterByAnnotation.html" />
+   <mapID target="biojsmsa" url="html/features/biojsmsa.html" />
    
    <mapID target="backIcon" url="icons/back.png" />
    <mapID target="forwardIcon" url="icons/forward.png" />