X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp.jhm;h=1666cc67e82207b0a4e67f752fa6b596f23079f8;hb=3cca90e99493a3ac2fd090cd45983ed62d11e627;hp=53b86d2d63b6fe1b8a8f06b0ec2f93a280453c60;hpb=09b25d3dc80f74c0fae97e27fd394417917f3906;p=jalview.git

diff --git a/help/help.jhm b/help/help.jhm
index 53b86d2..1666cc6 100755
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -22,7 +22,7 @@
    <mapID target="home" url="html/index.html" />
    
    <mapID target="new" url="html/whatsNew.html"/>
-   <mapID target="release" url="html/releases.html#Jalview.2.10.2"/>
+   <mapID target="release" url="html/releases.html#Jalview.$$Version-Rel$$"/>
    <mapID target="alannotation" url="html/features/annotation.html"/>
    <mapID target="keys" url="html/keys.html"/>
    <mapID target="newkeys" url="html/features/newkeystrokes.html"/>
@@ -54,6 +54,7 @@
    <mapID target="pdbmcviewer" url="html/features/pdbviewer.html"/>
    <mapID target="pdbjmol" url="html/features/jmol.html"/>
    <mapID target="chimera" url="html/features/chimera.html"/>
+   <mapID target="chimera.annotxfer" url="html/features/chimera.html#annotxfer"/>
    <mapID target="varna" url="html/features/varna.html"/>
    <mapID target="xsspannotation" url="html/features/xsspannotation.html"/>
    <mapID target="preferences" url="html/features/preferences.html"/>     
@@ -69,8 +70,6 @@
    <mapID target="annotations.fileformat" url="html/features/annotationsFormat.html"/>
    <mapID target="features.fileformat" url="html/features/featuresFormat.html"/>
    <mapID target="features.featureschemes" url="html/features/featureschemes.html"/>
-   <mapID target="das.settings" url="html/features/dassettings.html"/>
-   <mapID target="das.viewing" url="html/features/dasfeatures.html"/>
    <mapID target="edit" url="html/editing/index.html"/>
    <mapID target="jalarchive" url="html/features/jalarchive.html"/>
    <mapID target="multipleviews" url="html/features/multipleViews.html"/>
@@ -109,6 +108,7 @@
    <mapID target="calcs.alconserv" url="html/calculations/conservation.html"/>
    <mapID target="calcs.alstrconsensus" url="html/calculations/structureconsensus.html"/>  
    <mapID target="calcs.consensus" url="html/calculations/consensus.html"/>   
+   <mapID target="calcs.dialog" url="html/calculations/calculations.html"/>
    
    <mapID target="nucleicAcids" url="html/na/index.html"/>
    
@@ -131,6 +131,7 @@
    
    <mapID target="memory" url="html/memory.html" />
    <mapID target="groovy" url="html/features/groovy.html" />
+   <mapID target="groovy.colours" url="html/features/groovy.html#groovyColours" />
    <mapID target="groovy.featurescounter" url="html/groovy/featuresCounter.html" />
    <mapID target="privacy" url="html/privacy.html" />
    <mapID target="vamsas" url="html/vamsas/index.html"/>
@@ -142,6 +143,7 @@
    
    <mapID target="biojson" url="html/features/bioJsonFormat.html" />
    <mapID target="pdbfetcher" url="html/features/pdbsequencefetcher.html" />
+   <mapID target="pdbfts" url="html/features/pdbsequencefetcher.html#pdbfts" />
    <mapID target="siftsmapping" url="html/features/siftsmapping.html" />
    <mapID target="pdbchooser" url="html/features/structurechooser.html" />
    <mapID target="selectcolbyannot" url="html/features/columnFilterByAnnotation.html" />
@@ -150,9 +152,10 @@
    <mapID target="ensemblfetch" url="html/features/ensemblsequencefetcher.html" />
    
    <mapID target="uniprotfetcher" url="html/features/uniprotsequencefetcher.html" />
+   <mapID target="uniprotfts" url="html/features/uniprotsequencefetcher.html#uniprotfts" />
    
    <mapID target="urllinks" url="html/webServices/urllinks.html" />
-   <mapID target="linksprefs" url="html/features/Preferences.html#links" />
+   <mapID target="linksprefs" url="html/features/preferences.html#links" />
 
    <mapID target="backIcon" url="icons/back.png" />
    <mapID target="forwardIcon" url="icons/forward.png" />
@@ -160,5 +163,6 @@
    <mapID target="printIcon" url="icons/print.png" />
    <mapID target="printSetupIcon" url="icons/setup.png" />
    
-   <mapID target="overview" url="features/overview.html" />
+   <mapID target="overview" url="html/features/overview.html" />
+   <mapID target="overviewprefs" url="html/features/preferences.html#overview" />
 </map>