X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp.jhm;h=2179a733378d77bdc74e09687a6631be62d9e7d1;hb=1db1f53588cf74844c414838eda44015a5bfdf70;hp=cfd94ead0a2dadcf54bd76f358565525e12b2997;hpb=c45ccfd7c57e0cd4eae4cba455ef374ab84ddcd7;p=jalview.git

diff --git a/help/help.jhm b/help/help.jhm
index cfd94ea..2179a73 100755
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -42,7 +42,12 @@
    <mapID target="colours.pid" url="html/colourSchemes/pid.html" />
    <mapID target="colours.user" url="html/colourSchemes/user.html"/>
    <mapID target="colours.abovepid" url="html/colourSchemes/abovePID.html"/>
-   <mapID target="colours.conservation" url="html/colourSchemes/conservation.html"/>
+   <mapID target="colours.conservation"
+   url="html/colourSchemes/conservation.html"/>
+
+   <mapID target="calcs.alquality"
+   url="html/calculations/quality.html"/>   
+   <mapID target="calcs.alconserv" url="html/calculations/conservation.html"/>
    
    <mapID target="menus" url="html/menus/index.html"/>
    <mapID target="desktopMenu" url="html/menus/desktopMenu.html"/>
@@ -58,8 +63,10 @@
    <mapID target="annotMenus" url="html/menus/alwannotations.html"/>
    
    <mapID target="memory" url="html/memory.html" />
+   <mapID target="jalviewjnlp" url="html/jalviewjnlp.html" />
    
    <mapID target="aminoAcids" url="html/misc/aminoAcids.html" />
+   <mapID target="aaProperties" url="html/misc/aaproperties.html" />
    <mapID target="geneticCode" url="html/misc/geneticCode.html" />
    
    <mapID target="backIcon" url="icons/back.png" />