X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp.jhm;h=7d884b378be06ca85d245e162e391688a8abb294;hb=491e9b2d57b98d7c2e7c241506b72d6991973d2e;hp=36a54e4d51cf00cdb41c40740e5059e5e16e81c1;hpb=e143a4bd499db90ed40cec0ac3626efb5937983b;p=jalview.git

diff --git a/help/help.jhm b/help/help.jhm
index 36a54e4..7d884b3 100755
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -8,13 +8,18 @@
    <mapID target="wrap" url="html/features/wrap.html"/>
    <mapID target="overview" url="html/features/overview.html"/>
    <mapID target="seqfeatures" url="html/features/seqfeatures.html"/>
+   <mapID target="alannotation" url="html/features/annotation.html"/>
    
    <mapID target="webservice" url="html/webServices/index.html"/>
-   <mapID target="clustal" url="html/webServices/clustal.html"/>
+   <mapID target="clustal" url="html/webServices/clustalw.html"/>
+   <mapID target="muscle" url="html/webServices/muscle.html"/>
+   <mapID target="jnet" url="html/webServices/jnet.html"/>
    
    <mapID target="io" url="html/io/index.html"/>
+   <mapID target="export" url="html/io/export.html"/>
+   <mapID target="alformats" url="html/io/fileformats.html"/>
    <mapID target="edit" url="html/editing/index.html"/>
-
+   <mapID target="jalarchive" url="html/features/jalarchive.html"/>
    <mapID target="calculations" url="html/calculations/index.html"/>
    <mapID target="trees" url="html/calculations/tree.html"/>
    <mapID target="sorting" url="html/calculations/sorting.html"/>
@@ -41,7 +46,14 @@
    <mapID target="menus" url="html/menus/index.html"/>
    <mapID target="desktopMenu" url="html/menus/desktopMenu.html"/>
    <mapID target="alMenu" url="html/menus/alignmentMenu.html"/>
+   <mapID target="alwFile" url="html/menus/alwfile.html"/>
+   <mapID target="alwEdit" url="html/menus/alwedit.html"/>
+   <mapID target="alwColour" url="html/menus/alwcolour.html"/>
+   <mapID target="alwCalc" url="html/menus/alwcalculate.html"/>
+   
+   <mapID target="wsMenu" url="html/menus/wsmenu.html"/>
    <mapID target="popMenu" url="html/menus/popupMenu.html"/>
+   <mapID target="annotMenus" url="html/menus/alwannotations.html"/>
    
    
    <mapID target="aminoAcids" url="html/misc/aminoAcids.html" />