X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp.jhm;h=91ef82749ee2ad53e1afdf007c721116badf0b9b;hb=062a9a304c4be1f48715815ab5ae3baee0c31793;hp=0fd8d65c75324271d38329281e075117463f4fbf;hpb=dfabc2facf04bc805f0b6001b94de3c62b3049b0;p=jalview.git

diff --git a/help/help.jhm b/help/help.jhm
index 0fd8d65..91ef827 100755
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -15,10 +15,9 @@
    <mapID target="wsparams" url="html/webServices/webServicesParams.html"/>
    <mapID target="wsprefs" url="html/webServices/webServicesPrefs.html"/>
    <mapID target="msaservice" url="html/webServices/msaclient.html"/>
-   <mapID target="clustal" url="html/webServices/clustalw.html"/>
-   <mapID target="muscle" url="html/webServices/muscle.html"/>
-   <mapID target="mafft" url="html/webServices/mafft.html"/>
    <mapID target="jnet" url="html/webServices/jnet.html"/>
+   <mapID target="shmrws" url="html/webServices/shmr.html"/>
+   <mapID target="newsreader" url="html/webServices/newsreader.html"/>
    <mapID target="seqfetch" url="html/features/seqfetch.html"/>
    <mapID target="dbreffetcher" url="html/webservices/dbreffetcher.html"/>
    <mapID target="seqmappings" url="html/features/seqmappings.html"/>
@@ -30,6 +29,7 @@
    <mapID target="viewingpdbs" url="html/features/viewingpdbs.html"/>
    <mapID target="pdbmcviewer" url="html/features/pdbviewer.html"/>
    <mapID target="pdbjmol" url="html/features/jmol.html"/>
+   <mapID target="varna" url="html/features/varna.html"/>
    <mapID target="preferences" url="html/features/preferences.html"/>     
    <mapID target="commandline" url="html/features/commandline.html"/>
    <mapID target="clarguments" url="html/features/clarguments.html"/>
@@ -75,6 +75,7 @@
    
    <mapID target="calcs.alquality" url="html/calculations/quality.html"/>   
    <mapID target="calcs.alconserv" url="html/calculations/conservation.html"/>
+   <mapID target="calcs.alstrconsensus" url="html/calculations/structureconsensus.html"/>  
    <mapID target="calcs.consensus" url="html/calculations/consensus.html"/>
    
    <mapID target="nucleicAcids" url="html/na/index.html"/>