X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp.jhm;h=a8ff7fa6ff991a0136b24e31c6453ef868ce7f48;hb=e1cb1f4ff4ae05504c806d99395358629c807956;hp=f931e7e97fd598c96223ca523ead9fe1ba6f7f61;hpb=140b0d3f1d7a31d14cb02deb55214bbad44874be;p=jalview.git

diff --git a/help/help.jhm b/help/help.jhm
index f931e7e..a8ff7fa 100755
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -22,7 +22,7 @@
    <mapID target="home" url="html/index.html" />
    
    <mapID target="new" url="html/whatsNew.html"/>
-   <mapID target="release" url="html/releases.html#Jalview.2.10.1"/>
+   <mapID target="release" url="html/releases.html#Jalview.2.10.4"/>
    <mapID target="alannotation" url="html/features/annotation.html"/>
    <mapID target="keys" url="html/keys.html"/>
    <mapID target="newkeys" url="html/features/newkeystrokes.html"/>
@@ -54,6 +54,7 @@
    <mapID target="pdbmcviewer" url="html/features/pdbviewer.html"/>
    <mapID target="pdbjmol" url="html/features/jmol.html"/>
    <mapID target="chimera" url="html/features/chimera.html"/>
+   <mapID target="chimera.annotxfer" url="html/features/chimera.html#annotxfer"/>
    <mapID target="varna" url="html/features/varna.html"/>
    <mapID target="xsspannotation" url="html/features/xsspannotation.html"/>
    <mapID target="preferences" url="html/features/preferences.html"/>     
@@ -75,6 +76,7 @@
    <mapID target="jalarchive" url="html/features/jalarchive.html"/>
    <mapID target="multipleviews" url="html/features/multipleViews.html"/>
    <mapID target="splitframe" url="html/features/splitView.html"/>
+   <mapID target="splitframe.mirrorfonts" url="html/features/splitView.html#mirror"/>
    <mapID target="trees" url="html/calculations/tree.html"/>
    <mapID target="treeviewer" url="html/calculations/treeviewer.html"/>
    <mapID target="sorting" url="html/calculations/sorting.html"/>
@@ -108,6 +110,7 @@
    <mapID target="calcs.alconserv" url="html/calculations/conservation.html"/>
    <mapID target="calcs.alstrconsensus" url="html/calculations/structureconsensus.html"/>  
    <mapID target="calcs.consensus" url="html/calculations/consensus.html"/>   
+   <mapID target="calcs.dialog" url="html/calculations/calculations.html"/>
    
    <mapID target="nucleicAcids" url="html/na/index.html"/>
    
@@ -130,7 +133,8 @@
    
    <mapID target="memory" url="html/memory.html" />
    <mapID target="groovy" url="html/features/groovy.html" />
-   <mapID target="groovy.featurecounter" url="html/groovy/featureCounter.html" />
+   <mapID target="groovy.colours" url="html/features/groovy.html#groovyColours" />
+   <mapID target="groovy.featurescounter" url="html/groovy/featuresCounter.html" />
    <mapID target="privacy" url="html/privacy.html" />
    <mapID target="vamsas" url="html/vamsas/index.html"/>
    <mapID target="aminoAcids" url="html/misc/aminoAcids.html" />
@@ -141,6 +145,7 @@
    
    <mapID target="biojson" url="html/features/bioJsonFormat.html" />
    <mapID target="pdbfetcher" url="html/features/pdbsequencefetcher.html" />
+   <mapID target="pdbfts" url="html/features/pdbsequencefetcher.html#pdbfts" />
    <mapID target="siftsmapping" url="html/features/siftsmapping.html" />
    <mapID target="pdbchooser" url="html/features/structurechooser.html" />
    <mapID target="selectcolbyannot" url="html/features/columnFilterByAnnotation.html" />
@@ -149,9 +154,10 @@
    <mapID target="ensemblfetch" url="html/features/ensemblsequencefetcher.html" />
    
    <mapID target="uniprotfetcher" url="html/features/uniprotsequencefetcher.html" />
+   <mapID target="uniprotfts" url="html/features/uniprotsequencefetcher.html#uniprotfts" />
    
    <mapID target="urllinks" url="html/webServices/urllinks.html" />
-   <mapID target="linksprefs" url="html/features/Preferences.html#links" />
+   <mapID target="linksprefs" url="html/features/preferences.html#links" />
 
    <mapID target="backIcon" url="icons/back.png" />
    <mapID target="forwardIcon" url="icons/forward.png" />
@@ -159,5 +165,6 @@
    <mapID target="printIcon" url="icons/print.png" />
    <mapID target="printSetupIcon" url="icons/setup.png" />
    
-   <mapID target="overview" url="features/overview.html" />
+   <mapID target="overview" url="html/features/overview.html" />
+   <mapID target="overviewprefs" url="html/features/preferences.html#overview" />
 </map>