X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp.jhm;h=ce8b25d67ef62bf56c40568463585e2d3af33d84;hb=7692386ccfe778075dd83a753d30a7a27fe507be;hp=54cce2a779bf4843d55f22d80c7b8a0bdfc2f4f4;hpb=cd5042310088854fc941b55011fd152f463b982b;p=jalview.git

diff --git a/help/help.jhm b/help/help.jhm
index 54cce2a..ce8b25d 100755
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -22,7 +22,7 @@
    <mapID target="home" url="html/index.html" />
    
    <mapID target="new" url="html/whatsNew.html"/>
-   <mapID target="release" url="html/releases.html#Jalview.2.10.2"/>
+   <mapID target="release" url="html/releases.html#Jalview.$$Version-Rel$$"/>
    <mapID target="alannotation" url="html/features/annotation.html"/>
    <mapID target="keys" url="html/keys.html"/>
    <mapID target="newkeys" url="html/features/newkeystrokes.html"/>
@@ -54,6 +54,7 @@
    <mapID target="pdbmcviewer" url="html/features/pdbviewer.html"/>
    <mapID target="pdbjmol" url="html/features/jmol.html"/>
    <mapID target="chimera" url="html/features/chimera.html"/>
+   <mapID target="chimera.annotxfer" url="html/features/chimera.html#annotxfer"/>
    <mapID target="varna" url="html/features/varna.html"/>
    <mapID target="xsspannotation" url="html/features/xsspannotation.html"/>
    <mapID target="preferences" url="html/features/preferences.html"/>     
@@ -69,8 +70,6 @@
    <mapID target="annotations.fileformat" url="html/features/annotationsFormat.html"/>
    <mapID target="features.fileformat" url="html/features/featuresFormat.html"/>
    <mapID target="features.featureschemes" url="html/features/featureschemes.html"/>
-   <mapID target="das.settings" url="html/features/dassettings.html"/>
-   <mapID target="das.viewing" url="html/features/dasfeatures.html"/>
    <mapID target="edit" url="html/editing/index.html"/>
    <mapID target="jalarchive" url="html/features/jalarchive.html"/>
    <mapID target="multipleviews" url="html/features/multipleViews.html"/>
@@ -109,6 +108,7 @@
    <mapID target="calcs.alconserv" url="html/calculations/conservation.html"/>
    <mapID target="calcs.alstrconsensus" url="html/calculations/structureconsensus.html"/>  
    <mapID target="calcs.consensus" url="html/calculations/consensus.html"/>   
+   <mapID target="calcs.dialog" url="html/calculations/calculations.html"/>
    
    <mapID target="nucleicAcids" url="html/na/index.html"/>
    
@@ -125,6 +125,7 @@
    <mapID target="alwCalc" url="html/menus/alwcalculate.html"/>
    
    <mapID target="wsMenu" url="html/menus/wsmenu.html"/>
+   <mapID target="alwHmmer" url="html/menus/alwhmmer.html"/>
    <mapID target="popMenu" url="html/menus/popupMenu.html"/>
    <mapID target="popMenuAddref" url="html/menus/popupMenu.html#addrefannot"/>
    <mapID target="annotPanelMenu" url="html/menus/alwannotationpanel.html"/>
@@ -153,7 +154,7 @@
    <mapID target="uniprotfetcher" url="html/features/uniprotsequencefetcher.html" />
    
    <mapID target="urllinks" url="html/webServices/urllinks.html" />
-   <mapID target="linksprefs" url="html/features/Preferences.html#links" />
+   <mapID target="linksprefs" url="html/features/preferences.html#links" />
 
    <mapID target="backIcon" url="icons/back.png" />
    <mapID target="forwardIcon" url="icons/forward.png" />
@@ -161,5 +162,6 @@
    <mapID target="printIcon" url="icons/print.png" />
    <mapID target="printSetupIcon" url="icons/setup.png" />
    
-   <mapID target="overview" url="features/overview.html" />
+   <mapID target="overview" url="html/features/overview.html" />
+   <mapID target="overviewprefs" url="html/features/preferences.html#overview" />
 </map>