X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2FhelpTOC.xml;h=30665ec5d61d7fff0f9d035e8a6e56d93c20a5ae;hb=a8f483d04205bb8273ee311c12968b7e86d205fa;hp=c0e9b66ba603d09d162cdbb446502da50b6b29ac;hpb=a5eefc708b5f7aaedcd1640f944dd5b2851ea614;p=jalview.git

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index c0e9b66..30665ec 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="ISO-8859-1"  ?>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
@@ -21,10 +21,10 @@
 <toc version="1.0">
 <tocitem text="Jalview Documentation" target="home" expand="true" >
  <tocitem text="What's new" target="new" expand="true">
- <tocitem text="Protein Disorder Prediction" target="disorder"/>
-   <tocitem text="Alignment Conservation Analysis" target="aacon"/>
-  <tocitem text="RNAalifold RNA Secondary Structure Prediction" target="rnaalifold"/>
- <tocitem text="Select columns containing sequence features" target="seqfeatures.settings"/>
+    <tocitem text="RNAalifold RNA Secondary Structure Prediction" target="rnaalifold"/>
+    <tocitem text="Select columns containing sequence features" target="seqfeatures.settings.selcols"/>
+    <tocitem text="View all representative PDB structures" target="viewingpdbs.reps"/>
+    <tocitem text="Support for PAM250 for trees and PCA calculations" target="subtMatrices.pam250"/>
   </tocitem>
   <tocitem text="Editing Alignments" target ="edit"/>	
   <tocitem text="Cursor Mode" target="cursor"/>