X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2FhelpTOC.xml;h=626a24452da31afdcab7c0cd32fc137c22c447f7;hb=f1603374be8bdd8cb3e4c9d7f659fe54185e2f4a;hp=aa101301c212edbf47bb137dbc04508cb8d344bf;hpb=2f4f1d8fb6878271b64f327bc58c895f458137af;p=jalview.git

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index aa10130..626a244 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="ISO-8859-1"  ?>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
  * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
@@ -21,9 +21,10 @@
 <toc version="1.0">
 <tocitem text="Jalview Documentation" target="home" expand="true" >
  <tocitem text="What's new" target="new" expand="true">
- <tocitem text="Protein Disorder Prediction" target="disorder"/>
-   <tocitem text="Alignment Conservation Analysis" target="aacon"/>
-  <tocitem text="RNAalifold RNA Secondary Structure Prediction" target="rnaalifold"/>
+    <tocitem text="RNAalifold RNA Secondary Structure Prediction" target="rnaalifold"/>
+    <tocitem text="Select columns containing sequence features" target="seqfeatures.settings.selcols"/>
+    <tocitem text="View all representative PDB structures" target="viewingpdbs.reps"/>
+    <tocitem text="Support for PAM250 for trees and PCA calculations" target="subtMatrices.pam250"/>
   </tocitem>
   <tocitem text="Editing Alignments" target ="edit"/>	
   <tocitem text="Cursor Mode" target="cursor"/>