X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2FhelpTOC.xml;h=7d9e595a720c2a959041bc6d69ea5e12144da1b1;hb=40513f0731d40f708dfe414d75fa335ab47a2391;hp=fc523480f7449d6db24a5467fc6a47705ddea4b1;hpb=8c5dab7c7f049ac9f65a096bb243895cc49e4cd4;p=jalview.git

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index fc52348..7d9e595 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -76,11 +76,15 @@
 		<tocitem text="Popup Menu" target="popMenu"/>
                 </tocitem>
 	</tocitem>
+        <tocitem text="Preferences" target="preferences"/>
 	<tocitem text="Memory Settings" target="memory" expand="false">
           <tocitem text="JNLP with extra memory parameters" target="jalviewjnlp"/>
           </tocitem>
+        <tocitem text="Command Line" target="commandline" expand="false">
+          <tocitem text="Command Line Arguments" target="clarguments"/>
+        </tocitem>
 </tocitem>
-<tocitem text="Useful information" expand="true">
+<tocitem text="Useful information" expa nd="true">
 	<tocitem text="Amino Acid Table" target="aminoAcids"/>
 	<tocitem text="Amino Acid Properties" target="aaProperties"/>
 	<tocitem text="The Genetic Code" target="geneticCode"/>